Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   R3L04_RS05695 Genome accession   NZ_CP137075
Coordinates   1172209..1172535 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167209..1177535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS05670 (R3L04_05680) hemC 1167826..1168743 (+) 918 WP_031958707.1 hydroxymethylbilane synthase -
  R3L04_RS05675 (R3L04_05685) - 1168748..1169515 (+) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  R3L04_RS05680 (R3L04_05690) - 1169524..1170363 (+) 840 WP_001230210.1 hypothetical protein -
  R3L04_RS05685 (R3L04_05695) - 1170373..1171566 (+) 1194 WP_000681781.1 hypothetical protein -
  R3L04_RS05690 (R3L04_05700) - 1171574..1172014 (+) 441 WP_000661569.1 thioesterase family protein -
  R3L04_RS05695 (R3L04_05705) hns 1172209..1172535 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  R3L04_RS05700 (R3L04_05710) gspN 1172867..1173610 (+) 744 WP_000730343.1 type II secretion system protein N -
  R3L04_RS05705 (R3L04_05715) - 1173610..1174446 (+) 837 WP_000870034.1 type II secretion system protein N -
  R3L04_RS05710 (R3L04_05720) gspD 1174488..1176764 (+) 2277 WP_001196433.1 type II secretion system secretin GspD -
  R3L04_RS05715 (R3L04_05725) - 1176805..1177434 (+) 630 WP_000219964.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=894847 R3L04_RS05695 WP_000801427.1 1172209..1172535(+) (hns) [Acinetobacter baumannii strain SNUBHAB0006]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=894847 R3L04_RS05695 WP_000801427.1 1172209..1172535(+) (hns) [Acinetobacter baumannii strain SNUBHAB0006]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1