Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   R3L04_RS02660 Genome accession   NZ_CP137075
Coordinates   544023..544664 (-) Length   213 a.a.
NCBI ID   WP_031958555.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 539023..549664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS02640 (R3L04_02645) aroK 539939..540508 (-) 570 WP_000643712.1 shikimate kinase AroK -
  R3L04_RS02645 (R3L04_02650) pilQ 540520..542685 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  R3L04_RS02650 (R3L04_02655) pilP 542748..543275 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  R3L04_RS02655 (R3L04_02660) pilO 543286..544026 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  R3L04_RS02660 (R3L04_02665) pilN 544023..544664 (-) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  R3L04_RS02665 (R3L04_02670) pilM 544664..545722 (-) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  R3L04_RS02670 (R3L04_02675) ponA 545883..548438 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  R3L04_RS02675 (R3L04_02680) - 548456..549280 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  R3L04_RS02680 (R3L04_02685) - 549283..549615 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24047.41 Da        Isoelectric Point: 5.4028

>NTDB_id=894838 R3L04_RS02660 WP_031958555.1 544023..544664(-) (pilN) [Acinetobacter baumannii strain SNUBHAB0006]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLAEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=894838 R3L04_RS02660 WP_031958555.1 544023..544664(-) (pilN) [Acinetobacter baumannii strain SNUBHAB0006]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGCGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704