Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R3L04_RS00960 Genome accession   NZ_CP137075
Coordinates   207135..207518 (-) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 202135..212518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS00945 (R3L04_00950) - 204027..206105 (-) 2079 WP_000505932.1 methyl-accepting chemotaxis protein -
  R3L04_RS00950 (R3L04_00955) - 206152..206688 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  R3L04_RS00955 (R3L04_00960) - 206749..207111 (-) 363 WP_000101096.1 PleD family two-component system response regulator -
  R3L04_RS00960 (R3L04_00965) pilG 207135..207518 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  R3L04_RS00965 (R3L04_00970) - 207801..208439 (+) 639 WP_002027721.1 hypothetical protein -
  R3L04_RS00970 (R3L04_00975) - 208499..209617 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=894823 R3L04_RS00960 WP_000389061.1 207135..207518(-) (pilG) [Acinetobacter baumannii strain SNUBHAB0006]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=894823 R3L04_RS00960 WP_000389061.1 207135..207518(-) (pilG) [Acinetobacter baumannii strain SNUBHAB0006]
ATGGAAGATGCATTCCAAAATCTTAAAGTAATGGTTATTGATGACTCAAAAACTATACGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTAATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37