Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAYR26_RS10310 Genome accession   NZ_CP154901
Coordinates   1969146..1969895 (+) Length   249 a.a.
NCBI ID   WP_345818443.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2146     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1964146..1974895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR26_RS10295 (AAYR26_10305) - 1964328..1964519 (-) 192 WP_003184058.1 hypothetical protein -
  AAYR26_RS10300 (AAYR26_10310) - 1964981..1967623 (+) 2643 WP_009329289.1 valine--tRNA ligase -
  AAYR26_RS10305 (AAYR26_10315) - 1967705..1969003 (+) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AAYR26_RS10310 (AAYR26_10320) comC 1969146..1969895 (+) 750 WP_345818443.1 A24 family peptidase Machinery gene
  AAYR26_RS10315 (AAYR26_10325) - 1970099..1971130 (+) 1032 WP_003184050.1 SPOR domain-containing protein -
  AAYR26_RS10320 (AAYR26_10330) - 1971249..1972679 (+) 1431 WP_016886315.1 IS1182 family transposase -
  AAYR26_RS10325 (AAYR26_10335) - 1972827..1973399 (+) 573 WP_003184048.1 Maf family protein -
  AAYR26_RS10330 (AAYR26_10340) - 1973454..1973837 (+) 384 Protein_1894 UPF0758 domain-containing protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26982.58 Da        Isoelectric Point: 8.7373

>NTDB_id=894813 AAYR26_RS10310 WP_345818443.1 1969146..1969895(+) (comC) [Bacillus licheniformis strain FUA2146]
MFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIVLLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=894813 AAYR26_RS10310 WP_345818443.1 1969146..1969895(+) (comC) [Bacillus licheniformis strain FUA2146]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTCCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGTACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)

Type IV leader peptidase family (Peptidase_A24)

(102-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466