Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R3L07_RS04245 Genome accession   NZ_CP137073
Coordinates   884418..885236 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SNUBHAB0197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 879418..890236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L07_RS04230 (R3L07_04235) pilE 879635..880060 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  R3L07_RS04235 (R3L07_04240) pilY2 880057..880539 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  R3L07_RS04240 (R3L07_04245) pilY1 880552..884406 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L07_RS04245 (R3L07_04250) pilX 884418..885236 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L07_RS04250 (R3L07_04255) pilW 885233..886234 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  R3L07_RS04255 (R3L07_04260) pilV 886235..886795 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  R3L07_RS04260 (R3L07_04265) fimU 886789..887262 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L07_RS04265 (R3L07_04270) ispH 887432..888382 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L07_RS04270 (R3L07_04275) gmk 888505..889134 (+) 630 WP_000015937.1 guanylate kinase -
  R3L07_RS04275 (R3L07_04280) rpoZ 889207..889485 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L07_RS04280 (R3L07_04285) - 889524..889653 (+) 130 Protein_826 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=894785 R3L07_RS04245 WP_000149374.1 884418..885236(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0197]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=894785 R3L07_RS04245 WP_000149374.1 884418..885236(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0197]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993