Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   R3L06_RS08450 Genome accession   NZ_CP137069
Coordinates   1747289..1748857 (+) Length   522 a.a.
NCBI ID   WP_033915466.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0062     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742289..1753857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L06_RS08430 (R3L06_08430) - 1742780..1744081 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  R3L06_RS08435 (R3L06_08435) thrC 1744137..1745276 (+) 1140 WP_000063593.1 threonine synthase -
  R3L06_RS08440 (R3L06_08440) pbpG 1745384..1746430 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  R3L06_RS08445 (R3L06_08445) - 1746643..1747278 (+) 636 WP_000633799.1 response regulator -
  R3L06_RS08450 (R3L06_08450) pilS 1747289..1748857 (+) 1569 WP_033915466.1 PAS domain-containing sensor histidine kinase Regulator
  R3L06_RS08455 (R3L06_08455) pilR 1748882..1750303 (+) 1422 WP_017816292.1 sigma-54 dependent transcriptional regulator Regulator
  R3L06_RS08460 (R3L06_08460) - 1750307..1751491 (-) 1185 WP_000939107.1 S41 family peptidase -
  R3L06_RS08465 (R3L06_08465) gpmI 1751507..1753054 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59350.92 Da        Isoelectric Point: 6.6144

>NTDB_id=894700 R3L06_RS08450 WP_033915466.1 1747289..1748857(+) (pilS) [Acinetobacter baumannii strain SNUBHAB0062]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLIQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHRIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKLGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDVRHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNAPDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQAACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=894700 R3L06_RS08450 WP_033915466.1 1747289..1748857(+) (pilS) [Acinetobacter baumannii strain SNUBHAB0062]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGCTATTCGCTCTTAAGTCTTATTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCTACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTCTTATTTTTTGTGGTTCACAGAATTGGCCAAATTGCAGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTT
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGCTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAACAGCTTAAGCTTGCTGCGCTAGGGCAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTTGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGTCATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACTTTAGGGCTTGCTCGTA
GTGAAAGAACACATCCTATCCAGATCGATGTAAGACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGATGTTAAA
CATTCAATCCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATTAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCCCCGACTCACCCTACATTACGATCAACATCCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGCGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)

PAS fold (PAS)

(203-252)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

98.659

100

0.987