Detailed information NTG0894653

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: AAVC70_RS05870
• Genome accession: NZ_CP154898
• Coordinates: 941817..942947 (-)
• Length: 376 a.a.
• NCBI ID: WP_013353308.1
• Uniprot ID: A0A9P1JJI8
• Organism: Bacillus amyloliquefaciens strain Fad 97
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 936817..947947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVC70_RS05845 (AAVC70_05845)	-	937032..937700 (+)	669	WP_013353302.1	TrkA family potassium uptake protein	-
AAVC70_RS05850 (AAVC70_05850)	-	937724..938569 (-)	846	WP_013353303.1	glucosaminidase domain-containing protein	-
AAVC70_RS05855 (AAVC70_05855)	hmpA	938709..939884 (-)	1176	WP_013353304.1	NO-inducible flavohemoprotein	-
AAVC70_RS05860 (AAVC70_05860)	-	940101..940741 (+)	641	Protein_1028	cupin domain-containing protein	-
AAVC70_RS05865 (AAVC70_05865)	-	940801..941124 (-)	324	WP_013353306.1	hypothetical protein	-
AAVC70_RS05870 (AAVC70_05870)	rapC	941817..942947 (-)	1131	WP_013353308.1	tetratricopeptide repeat protein	Regulator
AAVC70_RS05875 (AAVC70_05875)	-	943335..943538 (+)	204	WP_014470862.1	hypothetical protein	-
AAVC70_RS05885 (AAVC70_05885)	-	943857..944687 (-)	831	WP_038463014.1	undecaprenyl-diphosphate phosphatase	-
AAVC70_RS05890 (AAVC70_05890)	-	944779..945939 (-)	1161	WP_013353344.1	AI-2E family transporter	-
AAVC70_RS05895 (AAVC70_05895)	-	946118..947104 (+)	987	WP_013353345.1	Gfo/Idh/MocA family oxidoreductase	-
AAVC70_RS05900 (AAVC70_05900)	-	947136..947660 (-)	525	WP_013353346.1	type 1 glutamine amidotransferase domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44372.86 Da
• Isoelectric Point: 6.5099

>NTDB_id=894653 AAVC70_RS05870 WP_013353308.1 941817..942947(-) (rapC) [Bacillus amyloliquefaciens strain Fad 97]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYSLMKFRHQLMLDYLEPVTVRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=894653 AAVC70_RS05870 WP_013353308.1 941817..942947(-) (rapC) [Bacillus amyloliquefaciens strain Fad 97]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAACGAGATGGAAGAAGACGAGTATTTACTAATATATTATT
CTCTCATGAAATTCCGCCATCAACTCATGCTTGATTATTTAGAGCCGGTAACTGTCAGAGTCCGACCGACAATCGACGAG
TTGCTGGAAAAAATCGAAGCATCAAATAAAGGCATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTTCGCGGCATGTA
TGAATTTGATCAGAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTGTTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCTATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

3D structure

• AlphaFold DB: A0A9P1JJI8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41