Detailed information NTG0089463

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ97_RS23580
• Genome accession: NZ_AP027709
• Coordinates: 4786699..4787724 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain PSS-15
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4781699..4792724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ97_RS23570 (VEE23_45710)	rpmE	4783930..4784142 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ97_RS23575 (VEE23_45720)	priA	4784345..4786543 (+)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
AABJ97_RS23580 (VEE23_45730)	cytR	4786699..4787724 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ97_RS23585 (VEE23_45740)	ftsN	4787816..4788775 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABJ97_RS23590 (VEE23_45750)	hslV	4788868..4789398 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ97_RS23595 (VEE23_45760)	hslU	4789408..4790739 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABJ97_RS23600 (VEE23_45770)	menA	4790806..4791732 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ97_RS23605 (VEE23_45780)	rraA	4791825..4792310 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ97_RS23610 (VEE23_45790)	zapB	4792395..4792640 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=89463 AABJ97_RS23580 WP_000644904.1 4786699..4787724(+) (cytR) [Escherichia coli strain PSS-15]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=89463 AABJ97_RS23580 WP_000644904.1 4786699..4787724(+) (cytR) [Escherichia coli strain PSS-15]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628