Detailed information NTG0894613

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: R3L09_RS12215
• Genome accession: NZ_CP137064
• Coordinates: 2449640..2450341 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain SNUBHAB0292
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2444640..2455341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L09_RS12185 (R3L09_12205)	-	2444946..2445389 (-)	444	WP_001246675.1	SRPBCC family protein	-
R3L09_RS12190 (R3L09_12210)	tadA	2445459..2445962 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
R3L09_RS12195 (R3L09_12215)	-	2445969..2447093 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
R3L09_RS12200 (R3L09_12220)	ung	2447090..2447803 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
R3L09_RS12205 (R3L09_12225)	-	2447854..2448450 (-)	597	WP_000908452.1	6-carboxytetrahydropterin synthase	-
R3L09_RS12210 (R3L09_12230)	gspK	2448681..2449640 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
R3L09_RS12215 (R3L09_12235)	xcpW	2449640..2450341 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
R3L09_RS12220 (R3L09_12240)	xcpV	2450341..2450721 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
R3L09_RS12225 (R3L09_12245)	-	2450711..2451265 (-)	555	WP_000841373.1	type II secretion system protein	-
R3L09_RS12230 (R3L09_12250)	-	2451275..2451883 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
R3L09_RS12235 (R3L09_12255)	-	2451921..2452694 (-)	774	WP_000497298.1	TatD family hydrolase	-
R3L09_RS12240 (R3L09_12260)	-	2452712..2453053 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
R3L09_RS12245 (R3L09_12265)	-	2453065..2454045 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
R3L09_RS12250 (R3L09_12270)	kdsB	2454057..2454818 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=894613 R3L09_RS12215 WP_000594589.1 2449640..2450341(-) (xcpW) [Acinetobacter baumannii strain SNUBHAB0292]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=894613 R3L09_RS12215 WP_000594589.1 2449640..2450341(-) (xcpW) [Acinetobacter baumannii strain SNUBHAB0292]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996