Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAVB98_RS08900 Genome accession   NZ_CP154895
Coordinates   1684809..1685099 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679809..1690099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS08885 (AAVB98_08885) - 1680037..1681356 (-) 1320 WP_014471348.1 G5 and 3D domain-containing protein -
  AAVB98_RS08890 (AAVB98_08890) - 1681491..1682258 (-) 768 WP_014469598.1 TatD family hydrolase -
  AAVB98_RS08895 (AAVB98_08895) metG 1682335..1684326 (-) 1992 WP_013350752.1 methionine--tRNA ligase -
  AAVB98_RS08900 (AAVB98_08900) abrB 1684809..1685099 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AAVB98_RS08905 (AAVB98_08905) rsmI 1685149..1686030 (-) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAVB98_RS08910 (AAVB98_08910) - 1686005..1686304 (-) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  AAVB98_RS08915 (AAVB98_08915) - 1686291..1687034 (-) 744 WP_013350749.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAVB98_RS08920 (AAVB98_08920) yabA 1687095..1687454 (-) 360 WP_013350748.1 replication initiation-control protein YabA -
  AAVB98_RS08925 (AAVB98_08925) yaaT 1687469..1688296 (-) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT Regulator
  AAVB98_RS08930 (AAVB98_08930) holB 1688299..1689288 (-) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  AAVB98_RS08935 (AAVB98_08935) - 1689300..1689740 (-) 441 WP_013350745.1 DUF327 family protein -
  AAVB98_RS08940 (AAVB98_08940) darA 1689753..1690082 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=894536 AAVB98_RS08900 WP_169510469.1 1684809..1685099(+) (abrB) [Bacillus amyloliquefaciens strain Fad 77]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=894536 AAVB98_RS08900 WP_169510469.1 1684809..1685099(+) (abrB) [Bacillus amyloliquefaciens strain Fad 77]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979