Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AAVB98_RS08815 Genome accession   NZ_CP154895
Coordinates   1669632..1669862 (-) Length   76 a.a.
NCBI ID   WP_013350764.1    Uniprot ID   A0A9P1JE37
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664632..1674862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS08805 (AAVB98_08805) spoVT 1665355..1665891 (-) 537 WP_013350766.1 stage V sporulation protein T -
  AAVB98_RS08810 (AAVB98_08810) mfd 1666028..1669561 (-) 3534 WP_013350765.1 transcription-repair coupling factor -
  AAVB98_RS08815 (AAVB98_08815) subA/fin 1669632..1669862 (-) 231 WP_013350764.1 anti-sigma-F factor Fin family protein Machinery gene
  AAVB98_RS08820 (AAVB98_08820) pth 1669924..1670490 (-) 567 WP_013350763.1 aminoacyl-tRNA hydrolase -
  AAVB98_RS08825 (AAVB98_08825) - 1670575..1671183 (-) 609 WP_013350762.1 50S ribosomal protein L25/general stress protein Ctc -
  AAVB98_RS08830 (AAVB98_08830) - 1671268..1672221 (-) 954 WP_013350761.1 ribose-phosphate diphosphokinase -
  AAVB98_RS08835 (AAVB98_08835) glmU 1672243..1673613 (-) 1371 WP_013350760.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AAVB98_RS08840 (AAVB98_08840) spoVG 1673804..1674097 (-) 294 WP_004264660.1 septation regulator SpoVG -
  AAVB98_RS08845 (AAVB98_08845) ridA 1674293..1674673 (-) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8893.91 Da        Isoelectric Point: 5.8002

>NTDB_id=894535 AAVB98_RS08815 WP_013350764.1 1669632..1669862(-) (subA/fin) [Bacillus amyloliquefaciens strain Fad 77]
MALHYFCRHCGIKVGSLEYTTVPTQSLGFQHLTNEERNDMISYKDNGDLHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=894535 AAVB98_RS08815 WP_013350764.1 1669632..1669862(-) (subA/fin) [Bacillus amyloliquefaciens strain Fad 77]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGTATTAAGGTAGGGAGCCTGGAATATACGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATCTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGGAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JE37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

84.211

100

0.842