Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAVB98_RS06970 Genome accession   NZ_CP154895
Coordinates   1302786..1303220 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297786..1308220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS06955 (AAVB98_06955) - 1298385..1299233 (-) 849 WP_345816847.1 diguanylate cyclase -
  AAVB98_RS06960 (AAVB98_06960) - 1299214..1300299 (-) 1086 WP_013351051.1 hypothetical protein -
  AAVB98_RS06965 (AAVB98_06965) - 1300535..1302721 (-) 2187 WP_013351049.1 DNA topoisomerase III -
  AAVB98_RS06970 (AAVB98_06970) lrpC 1302786..1303220 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  AAVB98_RS06975 (AAVB98_06975) - 1303394..1303684 (+) 291 WP_013351048.1 DUF3817 domain-containing protein -
  AAVB98_RS06980 (AAVB98_06980) - 1303725..1304534 (-) 810 WP_013351047.1 lipid II flippase Amj family protein -
  AAVB98_RS06985 (AAVB98_06985) - 1305034..1305456 (-) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAVB98_RS06990 (AAVB98_06990) - 1305463..1306086 (-) 624 WP_013351045.1 GNAT family protein -
  AAVB98_RS06995 (AAVB98_06995) - 1306174..1306677 (-) 504 WP_013351044.1 D-lyxose/D-mannose family sugar isomerase -
  AAVB98_RS07000 (AAVB98_07000) - 1306690..1307553 (-) 864 WP_061573974.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=894518 AAVB98_RS06970 WP_003156263.1 1302786..1303220(-) (lrpC) [Bacillus amyloliquefaciens strain Fad 77]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=894518 AAVB98_RS06970 WP_003156263.1 1302786..1303220(-) (lrpC) [Bacillus amyloliquefaciens strain Fad 77]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGAAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGCATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799