Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   R3L12_RS14020 Genome accession   NZ_CP137057
Coordinates   2992778..2993104 (+) Length   108 a.a.
NCBI ID   WP_004932341.1    Uniprot ID   A0A0M1I6N5
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987778..2998104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS13995 (R3L12_13975) hemC 2988383..2989306 (+) 924 WP_088458840.1 hydroxymethylbilane synthase -
  R3L12_RS14000 (R3L12_13980) - 2989309..2990076 (+) 768 WP_048766026.1 uroporphyrinogen-III synthase -
  R3L12_RS14005 (R3L12_13985) - 2990088..2990918 (+) 831 WP_149930911.1 hypothetical protein -
  R3L12_RS14010 (R3L12_13990) - 2990930..2992123 (+) 1194 WP_149930910.1 heme biosynthesis protein HemY -
  R3L12_RS14015 (R3L12_13995) - 2992132..2992569 (+) 438 WP_149930909.1 thioesterase family protein -
  R3L12_RS14020 (R3L12_14000) hns 2992778..2993104 (+) 327 WP_004932341.1 H-NS family nucleoid-associated regulatory protein Regulator
  R3L12_RS14025 (R3L12_14005) gspN 2993266..2994009 (+) 744 WP_025095805.1 type II secretion system protein N -
  R3L12_RS14030 (R3L12_14010) - 2994009..2994860 (+) 852 WP_004932348.1 type II secretion system protein N -
  R3L12_RS14035 (R3L12_14015) gspD 2994901..2997207 (+) 2307 WP_149931316.1 type II secretion system secretin GspD -
  R3L12_RS14040 (R3L12_14020) - 2997277..2997939 (+) 663 WP_055415476.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12410.04 Da        Isoelectric Point: 5.3410

>NTDB_id=894487 R3L12_RS14020 WP_004932341.1 2992778..2993104(+) (hns) [Acinetobacter soli strain SNUBHAB0075]
MKPDISELSVEDLKRLQAEAEQLIASKKDQAIEDAYNQILEVAESVGYSVEQLLEYGAQKRKKTTRKSVEPRYRSKSNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=894487 R3L12_RS14020 WP_004932341.1 2992778..2993104(+) (hns) [Acinetobacter soli strain SNUBHAB0075]
ATGAAACCAGATATTAGCGAATTATCCGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAGCAACTTATTGCCTCTAA
AAAAGATCAAGCAATTGAAGATGCGTATAACCAAATTTTAGAAGTTGCTGAAAGCGTGGGTTATAGCGTTGAGCAGTTAC
TTGAATACGGCGCGCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAGCCACGCTATCGCAGCAAGAGCAATCCAGAA
GAAACGTGGACTGGTCGTGGTAAACAACCGCGCTGGTTAGTCGCTGAGCTTGAAAAAGGTGCAAAATTAGAAGATTTCCT
TATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I6N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889