Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   R3L12_RS09565 Genome accession   NZ_CP137057
Coordinates   2032598..2033116 (+) Length   172 a.a.
NCBI ID   WP_149930140.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2027598..2038116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS09545 (R3L12_09525) - 2028268..2029293 (+) 1026 WP_149930138.1 class I SAM-dependent methyltransferase -
  R3L12_RS09550 (R3L12_09530) - 2029303..2030766 (+) 1464 WP_149930139.1 amino acid permease -
  R3L12_RS09555 (R3L12_09535) - 2030907..2031074 (+) 168 WP_004934934.1 hypothetical protein -
  R3L12_RS09560 (R3L12_09540) omp38 2031159..2032211 (-) 1053 WP_004934932.1 outer membrane protein Omp38 -
  R3L12_RS09565 (R3L12_09545) fimT 2032598..2033116 (+) 519 WP_149930140.1 GspH/FimT family pseudopilin Machinery gene
  R3L12_RS09570 (R3L12_09550) - 2033231..2034406 (+) 1176 WP_149930141.1 acetyl-CoA C-acyltransferase -
  R3L12_RS09575 (R3L12_09555) - 2034538..2034984 (+) 447 WP_004934924.1 VOC family protein -
  R3L12_RS09580 (R3L12_09560) - 2035000..2035317 (-) 318 WP_004934921.1 multidrug efflux SMR transporter -
  R3L12_RS09585 (R3L12_09565) - 2035462..2036403 (-) 942 WP_149930142.1 hypothetical protein -
  R3L12_RS09590 (R3L12_09570) - 2036474..2037292 (-) 819 WP_149930143.1 copper resistance protein B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19547.46 Da        Isoelectric Point: 8.8372

>NTDB_id=894462 R3L12_RS09565 WP_149930140.1 2032598..2033116(+) (fimT) [Acinetobacter soli strain SNUBHAB0075]
MNNNFLGFSLIEFLVTLTVLSILIGVGVPTYQHVMATQEANHIPRTLTIHIQKAKSDAVLYRHNVVLCPSIDKQTCSDDW
SKGFIVFLDQNRNRQRDLNEDLLSITDWNTRYGMLSWKGTLQSNHLMFRAASGLPIGSNGSFYYCSQKVSHKRLVISRMG
HFRVETLADCPT

Nucleotide


Download         Length: 519 bp        

>NTDB_id=894462 R3L12_RS09565 WP_149930140.1 2032598..2033116(+) (fimT) [Acinetobacter soli strain SNUBHAB0075]
ATGAATAACAATTTTTTAGGTTTTAGTTTAATTGAATTTCTCGTTACCCTCACGGTTTTAAGCATTTTAATTGGTGTCGG
AGTACCGACTTATCAGCATGTTATGGCGACTCAAGAAGCCAACCACATTCCAAGAACACTCACAATTCACATACAAAAAG
CAAAGTCCGATGCGGTGCTGTATCGTCATAACGTTGTGCTCTGCCCGAGTATAGACAAGCAAACCTGTAGCGACGACTGG
AGCAAGGGCTTTATTGTATTTTTAGATCAAAACCGTAACCGGCAGCGAGATCTCAATGAAGATCTGCTATCGATTACAGA
CTGGAATACCCGTTATGGCATGCTGTCTTGGAAGGGCACTTTGCAATCTAACCATTTGATGTTTCGGGCTGCAAGTGGCT
TGCCAATCGGATCAAATGGAAGCTTTTATTATTGTTCGCAAAAAGTCAGTCATAAACGTCTGGTGATCAGCCGCATGGGG
CACTTTCGTGTCGAAACCCTTGCCGATTGCCCAACATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(50-160)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

63.529

98.837

0.628