Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   R3L12_RS02665 Genome accession   NZ_CP137057
Coordinates   555271..555657 (+) Length   128 a.a.
NCBI ID   WP_004948134.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550271..560657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS02635 (R3L12_02625) kdsB 551178..551939 (+) 762 WP_149930173.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R3L12_RS02640 (R3L12_02630) - 551954..552940 (+) 987 WP_149930172.1 DNA polymerase III subunit delta' -
  R3L12_RS02645 (R3L12_02635) - 552943..553287 (+) 345 WP_004948143.1 PilZ domain-containing protein -
  R3L12_RS02650 (R3L12_02640) - 553303..554076 (+) 774 WP_004948140.1 TatD family hydrolase -
  R3L12_RS02655 (R3L12_02645) - 554115..554726 (+) 612 WP_004938726.1 TetR/AcrR family transcriptional regulator -
  R3L12_RS02660 (R3L12_02650) - 554736..555281 (+) 546 WP_149930171.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  R3L12_RS02665 (R3L12_02655) xcpV 555271..555657 (+) 387 WP_004948134.1 type II secretion system minor pseudopilin GspI Machinery gene
  R3L12_RS02670 (R3L12_02660) xcpW 555654..556277 (+) 624 WP_406626535.1 type II secretion system protein GspJ Machinery gene
  R3L12_RS02675 (R3L12_02665) gspK 556294..557262 (+) 969 WP_076032179.1 type II secretion system minor pseudopilin GspK -
  R3L12_RS02680 (R3L12_02670) - 557427..558023 (+) 597 WP_149930169.1 6-carboxytetrahydropterin synthase -
  R3L12_RS02685 (R3L12_02675) ung 558078..558791 (+) 714 WP_076032180.1 uracil-DNA glycosylase -
  R3L12_RS02690 (R3L12_02680) - 558788..559912 (+) 1125 WP_004938710.1 enoyl-CoA hydratase/isomerase family protein -
  R3L12_RS02695 (R3L12_02685) tadA 559918..560430 (+) 513 WP_004938709.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14260.44 Da        Isoelectric Point: 10.0033

>NTDB_id=894452 R3L12_RS02665 WP_004948134.1 555271..555657(+) (xcpV) [Acinetobacter soli strain SNUBHAB0075]
MKTKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAVLRTKAQFVAMNEAAMMQINREWMQGTSSKQVTSQGETWQV
DKTAQATISPNVQRIEIQISRFDPQQNKVEAGITHMVFFNYPPKENVS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=894452 R3L12_RS02665 WP_004948134.1 555271..555657(+) (xcpV) [Acinetobacter soli strain SNUBHAB0075]
ATGAAAACTAAAGGGTTTACATTATTAGAAGTGATGGTGGCGCTCGCGATTTTTGCAACCGCTGCGGTGGCCTTGACCAA
GCTCGGTATGCAGTATACTCAGTCTACAGCCAATGCCGTATTAAGAACCAAAGCACAATTCGTGGCAATGAACGAAGCCG
CCATGATGCAAATTAATCGTGAATGGATGCAAGGCACATCCTCAAAGCAAGTGACGTCTCAGGGTGAAACGTGGCAAGTC
GATAAAACTGCACAGGCGACGATTAGCCCAAACGTACAGCGGATTGAAATTCAGATCAGCCGCTTTGATCCTCAGCAAAA
CAAAGTTGAAGCGGGAATTACGCATATGGTGTTTTTCAATTATCCGCCTAAAGAAAACGTCTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.032

96.875

0.766