Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   R3L13_RS12445 Genome accession   NZ_CP137055
Coordinates   2596121..2598349 (-) Length   742 a.a.
NCBI ID   WP_000156636.1    Uniprot ID   A0A009PF88
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591121..2603349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS12425 (R3L13_12450) - 2591306..2592262 (-) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -
  R3L13_RS12430 (R3L13_12455) - 2592413..2593024 (-) 612 WP_001105722.1 LysE family translocator -
  R3L13_RS12435 (R3L13_12460) - 2593162..2594037 (-) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  R3L13_RS12440 (R3L13_12465) - 2594203..2596044 (-) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  R3L13_RS12445 (R3L13_12470) priA 2596121..2598349 (-) 2229 WP_000156636.1 primosomal protein N' Machinery gene
  R3L13_RS12450 (R3L13_12475) gspF 2598498..2599703 (+) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  R3L13_RS12455 (R3L13_12480) gspG 2599727..2600308 (+) 582 WP_000865310.1 type II secretion system major pseudopilin GspG -
  R3L13_RS12460 (R3L13_12485) - 2600576..2600920 (+) 345 WP_000643174.1 hypothetical protein -
  R3L13_RS12465 (R3L13_12490) - 2601065..2601403 (+) 339 WP_000434938.1 tRNA-binding protein -
  R3L13_RS12470 (R3L13_12495) lnt 2601405..2602964 (-) 1560 WP_004737954.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83957.84 Da        Isoelectric Point: 8.5147

>NTDB_id=894438 R3L13_RS12445 WP_000156636.1 2596121..2598349(-) (priA) [Acinetobacter baumannii strain SNUBHAB0137]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKAIQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKCLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYTVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=894438 R3L13_RS12445 WP_000156636.1 2596121..2598349(-) (priA) [Acinetobacter baumannii strain SNUBHAB0137]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTCTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAGACAGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTATTAAAACGCTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCAATACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTACAATTGGCGCAAATGCCACTCACGCTCAACGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCCTGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACATGACCTTTCTTATAAGCAACAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCGCTTTATCGAGGGCATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAAGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCACATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGTCACCATTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAATGTCAGCAAAAGTGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACTAGTCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAGGGTCATGTTTATTTACAAACATTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGTGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTTGCTTTA
CTCCCCCCTTATCGTTATACAGTCTTAATTCGTGCTGAGTCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCCAAGACAGCACCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PF88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977