Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   R3L13_RS11755 Genome accession   NZ_CP137055
Coordinates   2448445..2450013 (-) Length   522 a.a.
NCBI ID   WP_406626636.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443445..2455013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS11740 (R3L13_11760) gpmI 2444248..2445795 (+) 1548 WP_000128745.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  R3L13_RS11745 (R3L13_11765) - 2445811..2446995 (+) 1185 WP_004737879.1 S41 family peptidase -
  R3L13_RS11750 (R3L13_11770) pilR 2446999..2448420 (-) 1422 WP_000840549.1 sigma-54 dependent transcriptional regulator Regulator
  R3L13_RS11755 (R3L13_11775) pilS 2448445..2450013 (-) 1569 WP_406626636.1 sensor histidine kinase Regulator
  R3L13_RS11760 (R3L13_11780) - 2450024..2450659 (-) 636 WP_000633799.1 response regulator -
  R3L13_RS11765 (R3L13_11785) pbpG 2450872..2451918 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  R3L13_RS11770 (R3L13_11790) thrC 2452027..2453166 (-) 1140 WP_000063593.1 threonine synthase -
  R3L13_RS11775 (R3L13_11795) - 2453222..2454523 (-) 1302 WP_000805827.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59247.75 Da        Isoelectric Point: 6.4995

>NTDB_id=894432 R3L13_RS11755 WP_406626636.1 2448445..2450013(-) (pilS) [Acinetobacter baumannii strain SNUBHAB0137]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQTDNSLQQPALYSYTLLGYSLLSLVQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHTDLFEILKFGDLKEGDRFIFESRLSAYSINIKVQHLLVPQQTLTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDIKHFIDTLLEEDLFDVK
HSIQLKISDSSLKFLFDEKQLRQVMINLVRNALRHNATDSPYITINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=894432 R3L13_RS11755 WP_406626636.1 2448445..2450013(-) (pilS) [Acinetobacter baumannii strain SNUBHAB0137]
ATGCAATTTCCCTTAAATTCATCCTTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGCTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTAGTTTTAACCGATGCGCAAACTGATAACAGTTTGCAGCAACCTGCCTTATATTCCT
ACACACTACTCGGGTATTCCCTCTTAAGTCTTGTTCAGCTGTTATGCTTTAAATTTATTGCCACTCAAGCCACGCGACAG
CTTATTTTATTTTTTATTGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCCATCTTTACCTCGGCGATTTTACTCAGCGCAAGAATGTCTTTGCTGATTACATTGCTTGCGG
TTATCGCTGTTATTTACCAACGATTTGTAGGTAGTCTATTTGACTATAACAATCTAAATACTATTGGTAATAGCGCTCTC
TTAGCTTTTTTATTTTTTGTGGTTCACGGTATTGGCCAAATTGCTGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCTATTGAACTCTATCAACTCCAAAATATTAACCGTTATATCTTAGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAGAATTACGACATCGTTGTCAGTAATCCTGCGGCCTGTTCACTCTTGGGTATTCCCCCTCAATTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATACCGATTTATTTGAAATTTTAAAGTTTGGCGACTTAAAAGAAGGTGACCGATTCAT
TTTTGAGTCTCGGCTATCGGCGTACTCCATCAACATTAAAGTGCAACACCTTTTGGTCCCACAACAAACGCTAACCCTGC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCCCAGCAGCTTAAGCTTGCTGCCCTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGCAATCCTCTCGCTGCAATCGTACAAGCAAATGAGTTACTGAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTGGCAAACAAACCAAACGCATTGATAGTATTGTTCAAGATACCTTAGGGCTTGCTCGTA
GCGAAAGAACACATCCTATCCAGATCGATATAAAACACTTCATAGATACATTGCTCGAAGAAGATTTATTTGATGTTAAA
CATTCAATCCAACTTAAAATTTCGGATAGTTCTTTAAAATTTTTATTTGATGAAAAACAATTAAGACAAGTCATGATCAA
TCTGGTGAGAAATGCTTTACGGCATAATGCCACCGACTCGCCGTACATTACGATCAACATTCATTCACAGACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCGAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

99.234

100

0.992