Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   AAVD18_RS07445 Genome accession   NZ_CP154893
Coordinates   1438176..1439666 (-) Length   496 a.a.
NCBI ID   WP_013352711.1    Uniprot ID   A0A9P1NI75
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433176..1444666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS07415 (AAVD18_07415) gudB 1433251..1434525 (-) 1275 WP_013352705.1 NAD-specific glutamate dehydrogenase -
  AAVD18_RS07420 (AAVD18_07420) - 1434687..1435271 (-) 585 WP_013352706.1 genetic competence negative regulator -
  AAVD18_RS07425 (AAVD18_07425) - 1435423..1436211 (-) 789 WP_013352707.1 metallophosphoesterase -
  AAVD18_RS07430 (AAVD18_07430) - 1436298..1436756 (-) 459 WP_013352708.1 YpbF family protein -
  AAVD18_RS07435 (AAVD18_07435) - 1436820..1437596 (-) 777 WP_013352709.1 LysM peptidoglycan-binding domain-containing protein -
  AAVD18_RS07440 (AAVD18_07440) - 1437574..1438161 (-) 588 WP_014470039.1 CPBP family intramembrane glutamic endopeptidase -
  AAVD18_RS07445 (AAVD18_07445) recS 1438176..1439666 (-) 1491 WP_013352711.1 ATP-dependent DNA helicase RecQ Machinery gene
  AAVD18_RS07450 (AAVD18_07450) - 1439659..1440717 (-) 1059 WP_013352712.1 helix-turn-helix domain-containing protein -
  AAVD18_RS07455 (AAVD18_07455) - 1440987..1441235 (+) 249 WP_003153403.1 ferredoxin -
  AAVD18_RS07460 (AAVD18_07460) - 1441374..1441946 (-) 573 WP_013352713.1 ECF transporter S component -
  AAVD18_RS07465 (AAVD18_07465) serA 1442435..1444012 (+) 1578 WP_013352714.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56030.05 Da        Isoelectric Point: 5.9413

>NTDB_id=894381 AAVD18_RS07445 WP_013352711.1 1438176..1439666(-) (recS) [Bacillus amyloliquefaciens strain Fad 11/2]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFVLSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAIEHVADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLISKGVQETQARTAIHLYLQGKTN
KEQLQEELTCRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPEGPTGQCCSSCGMDLTPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=894381 AAVD18_RS07445 WP_013352711.1 1438176..1439666(-) (recS) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTTTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
CGTGCTTCAAAAGAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTTCCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTGTCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAATCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGGCAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCGACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGATTGAACATGTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGCGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCATTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACGGCAGCCCAAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGCATTCTGGCCGTCATACGGGACGCCGGTACAAGCGATGAGCGAAAGCTTC
GGGATGTTCTGATAAGCAAGGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCAAT
AAAGAGCAGCTGCAAGAAGAACTGACATGCCGCGTGGAAAAGAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAGGTCCAACCGGGCAATGCT
GCAGCAGCTGCGGAATGGATCTGACCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(216-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NI75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.556

100

0.696