Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R3Y73_RS18285 Genome accession   NZ_CP137015
Coordinates   3663425..3664324 (+) Length   299 a.a.
NCBI ID   WP_165409041.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3658425..3669324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS18265 (R3Y73_18265) - 3659116..3660819 (+) 1704 WP_077722192.1 glycosyl transferase -
  R3Y73_RS18270 (R3Y73_18270) - 3660816..3661097 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  R3Y73_RS18275 (R3Y73_18275) sucC 3661272..3662429 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  R3Y73_RS18280 (R3Y73_18280) sucD 3662458..3663360 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  R3Y73_RS18285 (R3Y73_18285) dprA 3663425..3664324 (+) 900 WP_165409041.1 DNA-processing protein DprA Machinery gene
  R3Y73_RS18290 (R3Y73_18290) topA 3664506..3666581 (+) 2076 WP_176283316.1 type I DNA topoisomerase -
  R3Y73_RS18295 (R3Y73_18295) trmFO 3666646..3667953 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  R3Y73_RS18300 (R3Y73_18300) xerC 3668023..3668940 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32836.91 Da        Isoelectric Point: 7.8285

>NTDB_id=894381 R3Y73_RS18285 WP_165409041.1 3663425..3664324(+) (dprA) [Bacillus velezensis strain CYS06]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTALSEGKTVPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKSIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=894381 R3Y73_RS18285 WP_165409041.1 3663425..3664324(+) (dprA) [Bacillus velezensis strain CYS06]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGCTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAATCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTACAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Legionella pneumophila strain ERS1305867

41.948

89.298

0.375
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365