Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R3Y73_RS17430 Genome accession   NZ_CP137015
Coordinates   3449589..3449873 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3444589..3454873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS17410 (R3Y73_17410) - 3445835..3446743 (+) 909 WP_077722151.1 ketopantoate reductase family protein -
  R3Y73_RS17415 (R3Y73_17415) - 3446773..3448005 (-) 1233 WP_070081754.1 aminopeptidase -
  R3Y73_RS17420 (R3Y73_17420) - 3448106..3448240 (-) 135 WP_003154559.1 protein YkpC -
  R3Y73_RS17425 (R3Y73_17425) mreBH 3448312..3449319 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  R3Y73_RS17430 (R3Y73_17430) abrB 3449589..3449873 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  R3Y73_RS17435 (R3Y73_17435) - 3450046..3451350 (+) 1305 WP_014304932.1 ATP-binding protein -
  R3Y73_RS17440 (R3Y73_17440) - 3451352..3452179 (+) 828 WP_146283566.1 gamma-glutamylcyclotransferase -
  R3Y73_RS17445 (R3Y73_17445) ktrC 3452220..3452885 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  R3Y73_RS17450 (R3Y73_17450) ade 3453034..3454767 (+) 1734 WP_176283298.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=894380 R3Y73_RS17430 WP_024085249.1 3449589..3449873(+) (abrB) [Bacillus velezensis strain CYS06]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=894380 R3Y73_RS17430 WP_024085249.1 3449589..3449873(+) (abrB) [Bacillus velezensis strain CYS06]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543