Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   R3Y73_RS17220 Genome accession   NZ_CP137015
Coordinates   3413230..3413694 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CYS06     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408230..3418694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS17200 (R3Y73_17200) - 3408710..3410530 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  R3Y73_RS17205 (R3Y73_17205) - 3410506..3411725 (-) 1220 Protein_3328 aminotransferase A -
  R3Y73_RS17210 (R3Y73_17210) - 3411926..3412087 (-) 162 WP_003154625.1 hypothetical protein -
  R3Y73_RS17215 (R3Y73_17215) cheV 3412276..3413187 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  R3Y73_RS17220 (R3Y73_17220) kre 3413230..3413694 (-) 465 WP_003154622.1 YkyB family protein Regulator
  R3Y73_RS17225 (R3Y73_17225) - 3413817..3415109 (-) 1293 WP_003154621.1 MFS transporter -
  R3Y73_RS17230 (R3Y73_17230) - 3415185..3415679 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  R3Y73_RS17235 (R3Y73_17235) - 3415754..3416617 (-) 864 WP_146276666.1 metallophosphoesterase -
  R3Y73_RS17240 (R3Y73_17240) fadH 3416759..3417523 (+) 765 WP_076851224.1 2,4-dienoyl-CoA reductase -
  R3Y73_RS17245 (R3Y73_17245) - 3417634..3418182 (+) 549 Protein_3336 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=894378 R3Y73_RS17220 WP_003154622.1 3413230..3413694(-) (kre) [Bacillus velezensis strain CYS06]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=894378 R3Y73_RS17220 WP_003154622.1 3413230..3413694(-) (kre) [Bacillus velezensis strain CYS06]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929