Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AAVD18_RS06025 Genome accession   NZ_CP154893
Coordinates   1199628..1201631 (-) Length   667 a.a.
NCBI ID   WP_013352417.1    Uniprot ID   A0A9P1JHT7
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1194628..1206631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS05975 (AAVD18_05975) sspO 1195076..1195222 (+) 147 WP_003153982.1 acid-soluble spore protein SspO -
  AAVD18_RS05980 (AAVD18_05980) - 1195252..1195398 (+) 147 WP_003153984.1 small acid-soluble spore protein P -
  AAVD18_RS05985 (AAVD18_05985) - 1195492..1195863 (+) 372 WP_013352424.1 spore coat protein -
  AAVD18_RS05990 (AAVD18_05990) - 1196098..1196526 (+) 429 WP_013352423.1 DUF2621 domain-containing protein -
  AAVD18_RS05995 (AAVD18_05995) - 1196554..1197045 (-) 492 WP_088030532.1 CcdC protein domain-containing protein -
  AAVD18_RS06000 (AAVD18_06000) pilH 1197125..1197487 (-) 363 WP_013352421.1 response regulator Machinery gene
  AAVD18_RS06005 (AAVD18_06005) - 1197572..1198279 (-) 708 WP_088030531.1 cytochrome c biogenesis protein CcdA -
  AAVD18_RS06010 (AAVD18_06010) - 1198481..1198654 (+) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAVD18_RS06015 (AAVD18_06015) - 1198727..1198945 (-) 219 WP_003153994.1 YneF family protein -
  AAVD18_RS06020 (AAVD18_06020) sirA 1199031..1199477 (-) 447 WP_013352418.1 sporulation inhibitor of replication protein SirA -
  AAVD18_RS06025 (AAVD18_06025) recP/tkt 1199628..1201631 (-) 2004 WP_013352417.1 transketolase Machinery gene
  AAVD18_RS06030 (AAVD18_06030) - 1201798..1202031 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  AAVD18_RS06035 (AAVD18_06035) - 1202100..1202750 (-) 651 WP_013352416.1 recombinase family protein -
  AAVD18_RS06040 (AAVD18_06040) yneA 1202766..1203077 (-) 312 WP_013352415.1 cell division suppressor protein YneA -
  AAVD18_RS06045 (AAVD18_06045) dinR/lexA 1203234..1203854 (+) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  AAVD18_RS06050 (AAVD18_06050) - 1204203..1204631 (-) 429 WP_013352414.1 hypothetical protein -
  AAVD18_RS06055 (AAVD18_06055) - 1204788..1205237 (+) 450 WP_013352413.1 YndM family protein -
  AAVD18_RS06060 (AAVD18_06060) - 1205265..1206095 (-) 831 WP_013352412.1 prohibitin family protein -
  AAVD18_RS06065 (AAVD18_06065) - 1206082..1206231 (-) 150 WP_013352411.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72570.62 Da        Isoelectric Point: 4.8151

>NTDB_id=894376 AAVD18_RS06025 WP_013352417.1 1199628..1201631(-) (recP/tkt) [Bacillus amyloliquefaciens strain Fad 11/2]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVNPQNPGWFNRDRFVLSAGHGSMLLYSMLHLSG
YDLSIDDLKQFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLELGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIAELTAAIEKARQNDKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGQEESKLTKEAYAWTFEEDFYVPDEVYAHFNQAVKEAGSKKEQEWNELFAAYQE
KYPELAEQLSLGMKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGIAKKIPFFVGGSADLAGSNKTTIKNAGDFTARDY
AGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLASLMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLAVQSQDHPTALVLTRQNLPTIDQQAEEAYAGVEKGAYIVSKAQTDAPDALLLATG
SEVGLAIEAQAKLAEENVHVSVVSMPSWDRFEKQSAEYKNSVLPPNVTKRLAIEMGSSFGWGKFTGLEGDVLAIDRFGAS
APGETIMKEYGFTAENVADRVKKLLNK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=894376 AAVD18_RS06025 WP_013352417.1 1199628..1201631(-) (recP/tkt) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGGATACAATTGAAAAGAAATCAGTTGCCACCATACGTACACTGTCTATAGACGCAATTGAAAAAGCTAATTCCGGACA
CCCGGGCATGCCGATGGGAGCCGCTCCGATGGCTTACACGCTGTGGACGAAATTTATGAATGTGAATCCGCAGAATCCAG
GCTGGTTTAACCGCGACCGTTTTGTTTTATCAGCAGGACACGGTTCAATGCTTTTATACAGCATGCTGCATTTAAGCGGA
TATGACCTCAGCATTGATGATCTGAAACAGTTCCGTCAATGGGGAAGCAAAACACCGGGACATCCGGAGTTCGGACATAC
AGCAGGAGTAGACGCAACGACCGGGCCTCTCGGACAGGGTATCGCGATGGCAGTGGGAATGGCAATCGCAGAACGCCATC
TGGCTGAGACATATAACCGTGATTCATTCAACGTAGTTGATCATTATACATACAGTATTTGCGGAGACGGCGATTTGATG
GAAGGCATTTCTTCCGAAGCAGCTTCTCTTGCAGGCCATCTGGAGTTAGGCCGCCTGATCGTATTATACGATTCTAATGA
TATTTCTTTAGACGGTGATTTAGACCGTTCTTTCTCTGAAAATGTAAAACAGCGTTTTGAAGCAATGAACTGGGAAGTCC
TTTATGTTGAGGACGGAAATAACATCGCTGAATTGACGGCTGCAATTGAAAAAGCGCGCCAGAATGATAAAAAACCGACT
TTAATTGAAGTGAAGACCACAATCGGTTTCGGTTCTCCAAACCGCGCGGGTACATCTGGCGTTCACGGCGCTCCATTAGG
ACAAGAAGAGAGCAAGCTGACGAAAGAAGCGTACGCTTGGACATTTGAAGAAGATTTTTATGTTCCGGATGAAGTATACG
CGCATTTCAACCAAGCTGTAAAAGAAGCCGGCTCGAAAAAAGAACAGGAATGGAATGAACTGTTCGCGGCTTATCAAGAA
AAATATCCTGAGCTTGCTGAACAGCTGTCACTCGGAATGAAAGGCGAGCTTCCGAAAGACTGGGATCAGGAAGTTCCTGT
TTATGAAAAAGGCAGCAGTCTTGCTTCCCGCGCATCTTCAGGTGAGGTGCTGAACGGCATCGCTAAGAAAATTCCTTTCT
TTGTCGGGGGATCTGCTGACCTTGCGGGTTCAAACAAAACGACAATCAAAAATGCAGGAGACTTCACGGCCAGAGACTAC
GCCGGGAAAAACTTCTGGTTCGGGGTCCGTGAATTCGCGATGGGCGCTGCTTTAAACGGAATGGCGCTTCACGGCGGCCT
TCGCGTATTCGGCGGCACATTCTTTGTGTTCTCTGACTATTTAAGACCTGCCATTCGTCTGGCGTCATTAATGGGGCTGC
CTGTCACTTATGTATTCACGCATGACAGTATTGCCGTAGGAGAAGACGGACCGACTCACGAACCGATTGAGCAGCTTGCT
TCTTTACGCGCACTTCCTAACCTTTCTGTGATCAGACCTGCTGACGGAAATGAAACCGCAGCTGCGTGGAAGCTTGCCGT
TCAAAGCCAGGATCACCCGACAGCTCTTGTATTGACACGCCAAAACCTGCCGACAATTGATCAGCAGGCTGAAGAAGCGT
ATGCCGGAGTGGAAAAAGGGGCTTATATCGTTTCCAAAGCACAAACGGATGCACCGGACGCACTTCTTTTAGCGACGGGT
TCTGAAGTCGGACTCGCGATTGAAGCTCAGGCGAAGCTTGCTGAAGAAAACGTTCACGTTTCTGTAGTCAGCATGCCGAG
CTGGGACCGCTTCGAAAAACAATCGGCTGAGTACAAAAACAGCGTACTTCCTCCGAACGTAACGAAACGTCTTGCGATTG
AAATGGGATCAAGCTTCGGATGGGGCAAATTTACCGGTCTTGAAGGAGACGTTCTCGCAATTGACCGTTTCGGCGCTTCA
GCTCCGGGAGAAACAATTATGAAAGAATACGGGTTTACTGCAGAAAACGTGGCTGACCGCGTAAAAAAACTGCTAAACAA
ATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-338)

Transketolase, C-terminal domain (Transketolase_C)

(549-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JHT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.891

99.25

0.555