Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AAVD18_RS04145 Genome accession   NZ_CP154893
Coordinates   760917..761279 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755917..766279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS04115 (AAVD18_04115) flgD 756832..757263 (+) 432 WP_013352262.1 flagellar hook assembly protein FlgD -
  AAVD18_RS04120 (AAVD18_04120) flgG 757288..758064 (+) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  AAVD18_RS04125 (AAVD18_04125) - 758104..758319 (+) 216 WP_013352264.1 flagellar FlbD family protein -
  AAVD18_RS04130 (AAVD18_04130) fliL 758316..758735 (+) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  AAVD18_RS04135 (AAVD18_04135) fliM 758769..759767 (+) 999 WP_013352266.1 flagellar motor switch protein FliM -
  AAVD18_RS04140 (AAVD18_04140) fliY 759757..760890 (+) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  AAVD18_RS04145 (AAVD18_04145) pilH 760917..761279 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  AAVD18_RS04150 (AAVD18_04150) fliZ 761294..761947 (+) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  AAVD18_RS04155 (AAVD18_04155) fliP 761940..762605 (+) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  AAVD18_RS04160 (AAVD18_04160) fliQ 762620..762889 (+) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  AAVD18_RS04165 (AAVD18_04165) fliR 762896..763675 (+) 780 WP_013352271.1 flagellar biosynthetic protein FliR -
  AAVD18_RS04170 (AAVD18_04170) flhB 763675..764754 (+) 1080 WP_061573891.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=894366 AAVD18_RS04145 WP_003154238.1 760917..761279(+) (pilH) [Bacillus amyloliquefaciens strain Fad 11/2]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=894366 AAVD18_RS04145 WP_003154238.1 760917..761279(+) (pilH) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383