Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AAVD18_RS03485 Genome accession   NZ_CP154893
Coordinates   626223..626672 (+) Length   149 a.a.
NCBI ID   WP_013352152.1    Uniprot ID   A0A9P1NHL6
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 621223..631672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS03445 (AAVD18_03445) ctaE 621346..621969 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  AAVD18_RS03450 (AAVD18_03450) ctaF 621972..622304 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  AAVD18_RS03455 (AAVD18_03455) ctaG 622329..623213 (+) 885 WP_014471807.1 cytochrome c oxidase assembly factor CtaG -
  AAVD18_RS03460 (AAVD18_03460) - 623246..623605 (-) 360 WP_013352148.1 YugN family protein -
  AAVD18_RS03465 (AAVD18_03465) - 623746..624189 (+) 444 WP_013352149.1 CBS domain-containing protein -
  AAVD18_RS03470 (AAVD18_03470) - 624274..625314 (+) 1041 WP_013352150.1 CAP domain-containing protein -
  AAVD18_RS03475 (AAVD18_03475) - 625486..625896 (+) 411 WP_013352151.1 YlbD family protein -
  AAVD18_RS03480 (AAVD18_03480) - 625912..626151 (+) 240 WP_003154475.1 YlbE-like family protein -
  AAVD18_RS03485 (AAVD18_03485) ylbF 626223..626672 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  AAVD18_RS03490 (AAVD18_03490) - 626731..627003 (+) 273 WP_013352153.1 YlbG family protein -
  AAVD18_RS03495 (AAVD18_03495) rsmD 627305..627859 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAVD18_RS03500 (AAVD18_03500) coaD 627864..628346 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  AAVD18_RS03505 (AAVD18_03505) ylbJ 628364..629590 (-) 1227 WP_014472570.1 sporulation integral membrane protein YlbJ -
  AAVD18_RS03510 (AAVD18_03510) - 629768..630547 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  AAVD18_RS03515 (AAVD18_03515) sepM 630553..631575 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16885.96 Da        Isoelectric Point: 4.9442

>NTDB_id=894357 AAVD18_RS03485 WP_013352152.1 626223..626672(+) (ylbF) [Bacillus amyloliquefaciens strain Fad 11/2]
MYATVESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=894357 AAVD18_RS03485 WP_013352152.1 626223..626672(+) (ylbF) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGTATGCAACAGTTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886