Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R3Y73_RS12080 Genome accession   NZ_CP137015
Coordinates   2415570..2416007 (-) Length   145 a.a.
NCBI ID   WP_029325718.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2410570..2421007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS12045 (R3Y73_12045) - 2411157..2411285 (-) 129 Protein_2330 hypothetical protein -
  R3Y73_RS12050 (R3Y73_12050) - 2411430..2412632 (+) 1203 WP_176283107.1 GTP-binding protein -
  R3Y73_RS12055 (R3Y73_12055) - 2412697..2413833 (+) 1137 WP_176283108.1 zinc-dependent alcohol dehydrogenase -
  R3Y73_RS12060 (R3Y73_12060) - 2413848..2414282 (+) 435 WP_021494203.1 RDD family protein -
  R3Y73_RS12065 (R3Y73_12065) - 2414400..2414675 (+) 276 WP_369719109.1 YckD family protein -
  R3Y73_RS12070 (R3Y73_12070) - 2414889..2415107 (+) 219 Protein_2335 family 1 glycosylhydrolase -
  R3Y73_RS12075 (R3Y73_12075) nin/comJ 2415150..2415548 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  R3Y73_RS12080 (R3Y73_12080) nucA/comI 2415570..2416007 (-) 438 WP_029325718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  R3Y73_RS12085 (R3Y73_12085) hxlB 2416366..2416923 (-) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  R3Y73_RS12090 (R3Y73_12090) hxlA 2416920..2417555 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  R3Y73_RS12095 (R3Y73_12095) - 2417787..2418149 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.31 Da        Isoelectric Point: 7.9203

>NTDB_id=894356 R3Y73_RS12080 WP_029325718.1 2415570..2416007(-) (nucA/comI) [Bacillus velezensis strain CYS06]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCQQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=894356 R3Y73_RS12080 WP_029325718.1 2415570..2416007(-) (nucA/comI) [Bacillus velezensis strain CYS06]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGATAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTCAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634