Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R3Y73_RS10525 Genome accession   NZ_CP137015
Coordinates   2097213..2097503 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2092213..2102503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS10485 (R3Y73_10485) darA 2092230..2092559 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  R3Y73_RS10490 (R3Y73_10490) - 2092572..2093012 (+) 441 WP_004264730.1 YaaR family protein -
  R3Y73_RS10495 (R3Y73_10495) holB 2093024..2094013 (+) 990 WP_176283082.1 DNA polymerase III subunit delta' -
  R3Y73_RS10500 (R3Y73_10500) ricT 2094016..2094843 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  R3Y73_RS10505 (R3Y73_10505) yabA 2094858..2095217 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  R3Y73_RS10510 (R3Y73_10510) - 2095278..2096021 (+) 744 WP_077721687.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R3Y73_RS10515 (R3Y73_10515) - 2096008..2096307 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  R3Y73_RS10520 (R3Y73_10520) rsmI 2096282..2097163 (+) 882 WP_094247307.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  R3Y73_RS10525 (R3Y73_10525) abrB 2097213..2097503 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  R3Y73_RS10530 (R3Y73_10530) metG 2097986..2099977 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  R3Y73_RS10535 (R3Y73_10535) - 2100053..2100820 (+) 768 WP_032868379.1 TatD family hydrolase -
  R3Y73_RS10540 (R3Y73_10540) - 2100955..2102280 (+) 1326 WP_176283083.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=894351 R3Y73_RS10525 WP_169510469.1 2097213..2097503(-) (abrB) [Bacillus velezensis strain CYS06]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=894351 R3Y73_RS10525 WP_169510469.1 2097213..2097503(-) (abrB) [Bacillus velezensis strain CYS06]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979