Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   R3Y73_RS10295 Genome accession   NZ_CP137015
Coordinates   2054586..2055698 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049586..2060698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS10270 (R3Y73_10270) rnpA 2050298..2050648 (-) 351 WP_004392944.1 ribonuclease P protein component -
  R3Y73_RS10275 (R3Y73_10275) rpmH 2050803..2050937 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  R3Y73_RS10280 (R3Y73_10280) dnaA 2051559..2052899 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  R3Y73_RS10285 (R3Y73_10285) dnaN 2053084..2054220 (+) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  R3Y73_RS10290 (R3Y73_10290) rlbA 2054355..2054570 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  R3Y73_RS10295 (R3Y73_10295) recF 2054586..2055698 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  R3Y73_RS10300 (R3Y73_10300) remB 2055716..2055961 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  R3Y73_RS10305 (R3Y73_10305) gyrB 2056021..2057937 (+) 1917 WP_077723123.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  R3Y73_RS10310 (R3Y73_10310) gyrA 2058152..2060611 (+) 2460 WP_077721681.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=894349 R3Y73_RS10295 WP_007409910.1 2054586..2055698(+) (recF) [Bacillus velezensis strain CYS06]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=894349 R3Y73_RS10295 WP_007409910.1 2054586..2055698(+) (recF) [Bacillus velezensis strain CYS06]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGGCAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943