Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   R3Y73_RS08505 Genome accession   NZ_CP137015
Coordinates   1707878..1709023 (+) Length   381 a.a.
NCBI ID   WP_077722992.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702878..1714023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS08485 (R3Y73_08485) - 1703352..1704068 (-) 717 WP_166705899.1 Crp/Fnr family transcriptional regulator -
  R3Y73_RS08490 (R3Y73_08490) narK 1704166..1705356 (-) 1191 WP_044052814.1 nitrate transporter NarK -
  R3Y73_RS08495 (R3Y73_08495) argS 1705491..1707161 (-) 1671 WP_025853601.1 arginine--tRNA ligase -
  R3Y73_RS08500 (R3Y73_08500) - 1707158..1707586 (-) 429 WP_176283589.1 DUF1934 domain-containing protein -
  R3Y73_RS08505 (R3Y73_08505) rapF 1707878..1709023 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  R3Y73_RS08510 (R3Y73_08510) phrF 1709007..1709126 (+) 120 WP_127069886.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  R3Y73_RS08515 (R3Y73_08515) - 1709327..1709530 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  R3Y73_RS08520 (R3Y73_08520) - 1709544..1709747 (+) 204 WP_069473623.1 hypothetical protein -
  R3Y73_RS08530 (R3Y73_08530) - 1710154..1710435 (+) 282 WP_014306021.1 hypothetical protein -
  R3Y73_RS08535 (R3Y73_08535) - 1710479..1710991 (+) 513 WP_077722993.1 stage II sporulation protein M -
  R3Y73_RS08540 (R3Y73_08540) - 1711582..1711800 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  R3Y73_RS08545 (R3Y73_08545) speB 1711970..1712842 (-) 873 WP_003151054.1 agmatinase -
  R3Y73_RS08550 (R3Y73_08550) speE 1712902..1713732 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6057

>NTDB_id=894344 R3Y73_RS08505 WP_077722992.1 1707878..1709023(+) (rapF) [Bacillus velezensis strain CYS06]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=894344 R3Y73_RS08505 WP_077722992.1 1707878..1709023(+) (rapF) [Bacillus velezensis strain CYS06]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567