Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   R3Y73_RS01275 Genome accession   NZ_CP137015
Coordinates   293571..294179 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain CYS06     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 288571..299179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3Y73_RS01235 (R3Y73_01235) - 289654..290160 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  R3Y73_RS01240 (R3Y73_01240) - 290299..290712 (+) 414 WP_003153535.1 hypothetical protein -
  R3Y73_RS01245 (R3Y73_01245) - 290742..291143 (-) 402 WP_176283392.1 YppG family protein -
  R3Y73_RS01250 (R3Y73_01250) - 291330..291512 (+) 183 WP_003153532.1 YppF family protein -
  R3Y73_RS01255 (R3Y73_01255) - 291551..291919 (-) 369 WP_176283393.1 YppE family protein -
  R3Y73_RS01260 (R3Y73_01260) - 291965..292210 (-) 246 WP_039063257.1 DUF5446 family protein -
  R3Y73_RS01265 (R3Y73_01265) sspM 292416..292520 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  R3Y73_RS01270 (R3Y73_01270) - 292564..293529 (-) 966 WP_176283394.1 DUF2515 domain-containing protein -
  R3Y73_RS01275 (R3Y73_01275) recU 293571..294179 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  R3Y73_RS01280 (R3Y73_01280) - 294218..297001 (+) 2784 WP_176283395.1 PBP1A family penicillin-binding protein -
  R3Y73_RS01285 (R3Y73_01285) - 297080..297571 (-) 492 WP_046559838.1 YpoC family protein -
  R3Y73_RS01290 (R3Y73_01290) nth 297568..298227 (-) 660 WP_003153517.1 endonuclease III -
  R3Y73_RS01295 (R3Y73_01295) dnaD 298246..298944 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=894309 R3Y73_RS01275 WP_003153521.1 293571..294179(+) (recU) [Bacillus velezensis strain CYS06]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=894309 R3Y73_RS01275 WP_003153521.1 293571..294179(+) (recU) [Bacillus velezensis strain CYS06]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896