Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AAFU62_RS04090 Genome accession   NZ_CP154891
Coordinates   831708..832778 (+) Length   356 a.a.
NCBI ID   WP_136268312.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 826708..837778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS04070 (AAFU62_04070) - 827700..828398 (+) 699 WP_002993304.1 GntR family transcriptional regulator -
  AAFU62_RS04075 (AAFU62_04075) - 828496..828828 (+) 333 WP_002989745.1 putative DNA-binding protein -
  AAFU62_RS04080 (AAFU62_04080) ffh 828843..830405 (+) 1563 WP_002993302.1 signal recognition particle protein -
  AAFU62_RS04085 (AAFU62_04085) - 830540..831238 (-) 699 WP_136098053.1 helix-turn-helix transcriptional regulator -
  AAFU62_RS04090 (AAFU62_04090) xerS 831708..832778 (+) 1071 WP_136268312.1 tyrosine recombinase XerS Machinery gene
  AAFU62_RS04095 (AAFU62_04095) - 833478..833960 (+) 483 WP_136268311.1 PASTA domain-containing protein -
  AAFU62_RS04100 (AAFU62_04100) citC 834049..835101 (+) 1053 WP_129321897.1 [citrate (pro-3S)-lyase] ligase -
  AAFU62_RS04105 (AAFU62_04105) - 835211..836605 (-) 1395 WP_023612467.1 oxaloacetate decarboxylase subunit alpha -
  AAFU62_RS04110 (AAFU62_04110) citX 836620..837198 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41529.65 Da        Isoelectric Point: 9.5552

>NTDB_id=894294 AAFU62_RS04090 WP_136268312.1 831708..832778(+) (xerS) [Streptococcus pyogenes strain 318231]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVSKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=894294 AAFU62_RS04090 WP_136268312.1 831708..832778(+) (xerS) [Streptococcus pyogenes strain 318231]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTAGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803