Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAFU62_RS00255 Genome accession   NZ_CP154891
Coordinates   33556..34311 (+) Length   251 a.a.
NCBI ID   WP_129321626.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 318231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28556..39311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFU62_RS00245 (AAFU62_00245) - 30959..32155 (+) 1197 WP_010921769.1 CHAP domain-containing protein -
  AAFU62_RS00250 (AAFU62_00250) - 32408..33370 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  AAFU62_RS00255 (AAFU62_00255) recO 33556..34311 (+) 756 WP_129321626.1 DNA repair protein RecO Machinery gene
  AAFU62_RS00260 (AAFU62_00260) plsX 34414..35421 (+) 1008 WP_002987696.1 phosphate acyltransferase PlsX -
  AAFU62_RS00265 (AAFU62_00265) - 35414..35656 (+) 243 WP_014407187.1 phosphopantetheine-binding protein -
  AAFU62_RS00270 (AAFU62_00270) purC 35808..36512 (+) 705 WP_164976450.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29565.06 Da        Isoelectric Point: 7.1579

>NTDB_id=894241 AAFU62_RS00255 WP_129321626.1 33556..34311(+) (recO) [Streptococcus pyogenes strain 318231]
MQLTESLGIVLFNRNYREYDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=894241 AAFU62_RS00255 WP_129321626.1 33556..34311(+) (recO) [Streptococcus pyogenes strain 318231]
ATGCAACTAACAGAATCACTAGGCATCGTTCTTTTTAATAGGAATTATCGAGAATATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGCACTGATTTA
CCGCTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATC
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

59.761

100

0.598