Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F7G23_RS05085 Genome accession   NZ_AP024921
Coordinates   1093101..1093730 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O145:H28 strain 12E115     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088101..1098730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G23_RS05065 (EC12E115_0971) ycbZ 1088488..1090248 (-) 1761 WP_000156509.1 Lon protease family protein -
  F7G23_RS05070 (EC12E115_0972) matP 1090434..1090886 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F7G23_RS05075 (EC12E115_0973) ompA 1090961..1092016 (-) 1056 WP_000750414.1 porin OmpA -
  F7G23_RS05080 (EC12E115_0974) sulA 1092373..1092882 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F7G23_RS05085 (EC12E115_0975) sxy/tfoX 1093101..1093730 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F7G23_RS05090 (EC12E115_0976) yccS 1093693..1095855 (-) 2163 WP_000875041.1 YccS family putative transporter -
  F7G23_RS05095 (EC12E115_0977) yccF 1095865..1096311 (-) 447 WP_001261235.1 YccF domain-containing protein -
  F7G23_RS05100 (EC12E115_0978) helD 1096434..1098488 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=89423 F7G23_RS05085 WP_000839153.1 1093101..1093730(+) (sxy/tfoX) [Escherichia coli O145:H28 strain 12E115]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=89423 F7G23_RS05085 WP_000839153.1 1093101..1093730(+) (sxy/tfoX) [Escherichia coli O145:H28 strain 12E115]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment