Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU34_RS15380 Genome accession   NZ_AP024912
Coordinates   389566..390669 (+) Length   367 a.a.
NCBI ID   WP_123014169.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 386620..388892 389566..390669 flank 674


Gene organization within MGE regions


Location: 386620..390669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS15360 - 387950..388162 (-) 213 Protein_356 IS66 family transposase -
  OCU34_RS15365 tnpB 388222..388575 (-) 354 WP_164711753.1 IS66 family insertion sequence element accessory protein TnpB -
  OCU34_RS15370 tnpA 388572..388892 (-) 321 Protein_358 IS66 family insertion sequence element accessory protein TnpA -
  OCU34_RS15375 - 389206..389382 (+) 177 Protein_359 conjugal transfer protein TraF -
  OCU34_RS15380 luxP 389566..390669 (+) 1104 WP_123014169.1 substrate-binding domain-containing protein Regulator

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41817.67 Da        Isoelectric Point: 6.5907

>NTDB_id=89417 OCU34_RS15380 WP_123014169.1 389566..390669(+) (luxP) [Vibrio zhugei strain KCTC 62784]
MIKIISSLLVCGLSVVMSLPTDASQSLKGYWHYQEYLELNPEQQTLTQSLSDMVHQPAVPLNRPQQKPVTISVIYPGSQV
SDYWVRNIKAFELRMEELGIRYTINQVFTRPNVDARQQSLSLMEALKDKSQYLIFTLNTVRHRKFIEHVLQSSATKIMLQ
NITTPVKAWKDHQPMMYVGFDHEMGTKRLADYFSQVEPTDSRYAMLYYSEGYISAARGDTFIEQMHQRGNYQLMDSYYTD
ATEQGGYDATMHILDTDSNIQFIYACSTDIALGAMKALEKRGKQHIKLNGWGGGTAELNAILAGKLDATVMRMNDDTGVA
MAEAIKLDLEGKPVPTVYSGQFQLVTKEDSPERIRQLEKQAFRYSDR

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=89417 OCU34_RS15380 WP_123014169.1 389566..390669(+) (luxP) [Vibrio zhugei strain KCTC 62784]
ATGATTAAAATTATTTCTTCCCTTTTAGTATGTGGCTTGAGTGTTGTGATGAGCTTGCCTACTGATGCATCACAAAGTCT
CAAAGGATACTGGCACTACCAAGAATATCTCGAACTGAACCCTGAACAGCAAACACTGACCCAGAGCTTGAGTGATATGG
TTCATCAACCGGCGGTGCCATTGAATCGGCCACAGCAAAAGCCAGTCACCATTTCTGTTATTTATCCGGGTAGCCAAGTC
TCTGATTACTGGGTACGTAATATCAAGGCGTTTGAATTACGTATGGAAGAGCTTGGAATTCGTTACACCATTAATCAAGT
GTTCACTCGGCCCAATGTCGATGCTCGCCAACAAAGTTTATCTTTAATGGAAGCACTGAAAGATAAGTCTCAATATTTAA
TTTTCACGCTCAATACGGTACGGCATCGCAAGTTTATTGAACATGTACTTCAGTCTTCGGCAACCAAGATCATGTTGCAA
AATATCACGACACCGGTGAAAGCCTGGAAGGATCATCAGCCAATGATGTATGTTGGCTTTGACCATGAGATGGGAACGAA
GCGTCTTGCGGATTATTTCAGCCAAGTCGAGCCGACGGACAGTCGCTATGCCATGTTGTATTATTCAGAAGGCTACATCA
GTGCAGCACGAGGTGATACGTTTATTGAACAGATGCATCAACGCGGCAATTACCAGTTAATGGACTCGTATTATACTGAT
GCCACGGAACAAGGTGGCTACGATGCCACGATGCACATTTTGGACACGGATTCGAATATCCAATTTATTTACGCGTGCTC
TACTGATATTGCCTTAGGGGCAATGAAAGCGTTAGAAAAGCGTGGCAAGCAGCACATTAAGCTTAATGGATGGGGCGGTG
GTACGGCTGAGTTAAACGCGATTCTCGCGGGTAAGTTGGATGCGACAGTCATGCGCATGAACGACGATACCGGGGTGGCT
ATGGCCGAAGCCATCAAACTGGATTTAGAAGGCAAACCTGTCCCTACTGTCTACTCTGGCCAGTTTCAACTGGTGACCAA
AGAAGACAGTCCAGAGCGTATTCGTCAGTTAGAGAAGCAAGCTTTTCGCTACTCTGACCGTTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

61.37

99.455

0.61

Multiple sequence alignment