Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R1Y13_RS27730 Genome accession   NZ_CP136999
Coordinates   5934489..5934890 (-) Length   133 a.a.
NCBI ID   WP_012274552.1    Uniprot ID   A0A7Y3UUX4
Organism   Pseudomonas sp. NY8938     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5929489..5939890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y13_RS27715 (R1Y13_27605) - 5931453..5933477 (-) 2025 WP_223296421.1 methyl-accepting chemotaxis protein -
  R1Y13_RS27720 (R1Y13_27610) - 5933525..5934079 (-) 555 WP_012274550.1 chemotaxis protein CheW -
  R1Y13_RS27725 (R1Y13_27615) pilH 5934076..5934441 (-) 366 WP_012274551.1 twitching motility response regulator PilH -
  R1Y13_RS27730 (R1Y13_27620) pilG 5934489..5934890 (-) 402 WP_012274552.1 PleD family two-component system response regulator Regulator
  R1Y13_RS27735 (R1Y13_27625) gshB 5935045..5935998 (+) 954 WP_012274553.1 glutathione synthase -
  R1Y13_RS27740 (R1Y13_27630) - 5936090..5936995 (+) 906 WP_012274554.1 energy transducer TonB -
  R1Y13_RS27745 (R1Y13_27635) - 5937162..5937731 (+) 570 WP_012274555.1 YqgE/AlgH family protein -
  R1Y13_RS27750 (R1Y13_27640) ruvX 5937731..5938156 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  R1Y13_RS27755 (R1Y13_27645) pyrR 5938206..5938724 (+) 519 WP_012274556.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  R1Y13_RS27760 (R1Y13_27650) - 5938737..5939741 (+) 1005 WP_008099987.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14658.96 Da        Isoelectric Point: 6.4772

>NTDB_id=894158 R1Y13_RS27730 WP_012274552.1 5934489..5934890(-) (pilG) [Pseudomonas sp. NY8938]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSVFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAVPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=894158 R1Y13_RS27730 WP_012274552.1 5934489..5934890(-) (pilG) [Pseudomonas sp. NY8938]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCACAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCGCGCCTGGACGGTTACCAGACCTGCGCGGTCATCAAGCACAACAGTGTCTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCGCGCGACGGCCTGTTCGACAAGGCTCGTGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAATTGCTCGACGCGATCCGCGCCCACGTGCCCGGGTTTGCCGTACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3UUX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632