Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU34_RS12335 Genome accession   NZ_AP024911
Coordinates   2648895..2649941 (-) Length   348 a.a.
NCBI ID   WP_261809166.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2643895..2654941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS12310 rraA 2644525..2645064 (-) 540 WP_123017053.1 ribonuclease E activity regulator RraA -
  OCU34_RS12315 - 2645138..2646055 (-) 918 WP_123017054.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU34_RS12320 hslU 2646160..2647494 (-) 1335 WP_123017055.1 HslU--HslV peptidase ATPase subunit -
  OCU34_RS12325 hslV 2647540..2648103 (-) 564 WP_123017056.1 ATP-dependent protease subunit HslV -
  OCU34_RS12330 - 2648223..2648777 (-) 555 WP_123017057.1 SPOR domain-containing protein -
  OCU34_RS12335 cytR 2648895..2649941 (-) 1047 WP_261809166.1 DNA-binding transcriptional regulator CytR Regulator
  OCU34_RS12340 priA 2650204..2652408 (-) 2205 WP_123017059.1 primosomal protein N' -
  OCU34_RS12345 rpmE 2652715..2652930 (+) 216 WP_123017060.1 50S ribosomal protein L31 -
  OCU34_RS12350 - 2653229..2654497 (+) 1269 WP_123017061.1 malic enzyme-like NAD(P)-binding protein -
  OCU34_RS12355 metJ 2654582..2654899 (-) 318 WP_077315144.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38445.27 Da        Isoelectric Point: 6.7553

>NTDB_id=89413 OCU34_RS12335 WP_261809166.1 2648895..2649941(-) (cytR) [Vibrio zhugei strain KCTC 62784]
MNYPDFNKRVFCMATMKNVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPD
ICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKREHSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFA
PELELPTVHIDNLTSAFEAVNYLTQMGHKRIAEIAGPKSAALCSFRHQGYQQALRRAGLTMNDDYCMHGDFSFDAGAHIV
TQLLALPQAPTAIFCHNDMMAIGAIQKAKRLGLRVPQDLSVVGFDDIQFAQFCDPPLTTISQPRYEIGRQAMLMMLDVLR
GHDVQAGSRLLDTALVVRESTAPPRSVQ

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=89413 OCU34_RS12335 WP_261809166.1 2648895..2649941(-) (cytR) [Vibrio zhugei strain KCTC 62784]
ATTAACTATCCAGATTTTAATAAGAGGGTTTTTTGTATGGCGACAATGAAGAACGTTGCCCAGCTTGCCGGTGTATCAAC
TGCCACGGTCTCTCGTGCATTGATGAACCCGGAAAAAGTCTCTTCTTCGACACGCAAACGTGTGGAAGAAGCGGTTTTAG
AAGCGGGTTACTCTCCAAATTCTTTAGCGAGAAACTTACGCCGAAATGAATCGAAGACGATCGTCGCGATCGTGCCTGAT
ATCTGTGATCCTTATTTCTCTGAAATCATTCGTGGCATCGAAGATGCAGCGATGGAGCACGGGTATTTAGTTTTACTTGG
TGATAGTGGACAACAAAAGAAGCGGGAACATTCATTCGTCAACCTTGTGTTTACGAAACAAGCCGATGGTATGTTATTGC
TCGGTACGGATCTGCCGTTTGATGTTAGCAAACCTGAGCAGAAAAATTTGCCGCCGATGGTGATGGCGTGCGAGTTTGCT
CCTGAGCTGGAATTACCCACCGTTCATATTGATAACTTAACGTCGGCCTTTGAAGCGGTGAACTATTTAACGCAAATGGG
TCACAAGCGTATTGCTGAAATCGCGGGACCTAAGAGTGCGGCCTTGTGTTCTTTTCGCCACCAAGGTTATCAGCAAGCTT
TGCGCCGAGCGGGTCTTACCATGAATGATGATTACTGTATGCACGGTGATTTTTCGTTTGATGCAGGCGCGCACATCGTG
ACGCAGTTGCTCGCGTTGCCTCAAGCGCCCACCGCCATTTTTTGTCACAATGACATGATGGCGATTGGTGCTATCCAAAA
AGCCAAACGTCTTGGTTTGCGTGTGCCGCAGGATTTATCCGTGGTTGGATTTGATGACATCCAATTTGCTCAATTTTGCG
ATCCACCATTGACGACGATTTCGCAACCTCGTTATGAAATTGGCCGTCAGGCGATGCTTATGATGTTAGATGTCTTGCGT
GGGCATGATGTTCAAGCCGGATCAAGACTGCTTGATACCGCTTTGGTAGTCAGAGAAAGTACCGCGCCGCCGCGCTCTGT
GCAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-341)

Bacterial regulatory proteins, lacI family (LacI)

(15-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

90.964

95.402

0.868
  cytR Vibrio parahaemolyticus RIMD 2210633

85.207

97.126

0.828

Multiple sequence alignment