Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R4823_RS03710 Genome accession   NZ_CP136998
Coordinates   736116..737591 (-) Length   491 a.a.
NCBI ID   WP_087837519.1    Uniprot ID   -
Organism   Pigmentiphaga sp. CHJ604     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 731116..742591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4823_RS03685 - 731266..732252 (-) 987 WP_338619107.1 septal ring lytic transglycosylase RlpA family protein -
  R4823_RS03690 rapZ 732379..733296 (-) 918 WP_087837515.1 RNase adapter RapZ -
  R4823_RS03695 hprK 733642..734574 (-) 933 WP_338617491.1 HPr(Ser) kinase/phosphatase -
  R4823_RS03700 ptsN 734613..735089 (-) 477 WP_087837517.1 PTS IIA-like nitrogen regulatory protein PtsN -
  R4823_RS03705 raiA 735511..735840 (-) 330 WP_132979082.1 ribosome-associated translation inhibitor RaiA -
  R4823_RS03710 rpoN/rpoN1 736116..737591 (-) 1476 WP_087837519.1 RNA polymerase factor sigma-54 Machinery gene
  R4823_RS03715 lptB 737601..738410 (-) 810 WP_087837520.1 LPS export ABC transporter ATP-binding protein -
  R4823_RS03720 lptA 738407..739015 (-) 609 WP_132979081.1 lipopolysaccharide transport periplasmic protein LptA -
  R4823_RS03725 lptC 739023..739640 (-) 618 WP_087837522.1 LPS export ABC transporter periplasmic protein LptC -
  R4823_RS03730 - 739637..740245 (-) 609 WP_087837523.1 HAD hydrolase family protein -
  R4823_RS03735 - 740251..741267 (-) 1017 WP_087837524.1 KpsF/GutQ family sugar-phosphate isomerase -
  R4823_RS03740 - 741479..742018 (+) 540 WP_087837659.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 53462.65 Da        Isoelectric Point: 4.7704

>NTDB_id=894126 R4823_RS03710 WP_087837519.1 736116..737591(-) (rpoN/rpoN1) [Pigmentiphaga sp. CHJ604]
MLKPGLQLRTSQHLALTPALQQSIKLLQLSTLELEHEIEQILQENPLLEREDDPVAATLRVDADGSMHTTAPAAPEADGE
PGGETVEAPTPADAGDGPDLPDMPELHRPGGEHDDDTAPQLAAPDASLREHLLGQLALTQATPRDAALVTALVDELDDNG
YLDVSLEELAALFPPELEIDADELRSALGLLQSFDPAGVGARNISECLCLQLRTPDLDCLPEARDAEVLALARQIAAQHL
PLLGARDYAKLRKALGCNDDQLRAAQSLIRRLDPRPGSRYSSPAADYVVPDVIVRKVGNQWRATLNGEAMPRLRINQMYA
QILKSERSSAHPGLSSQLQEARWLIRNVQQRFDTILRVAQAIVDRQQGFLNHGEVAMRPLVLREIADTLGLHESTISRVT
TQKYMLTPLGTFELKYFFGSHVATETGGAASSTAIRALIKQLIGAEDPTQPLSDSQLAQTLGEQGIVVARRTVAKYREAL
KIPPVSLRKSI

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=894126 R4823_RS03710 WP_087837519.1 736116..737591(-) (rpoN/rpoN1) [Pigmentiphaga sp. CHJ604]
ATGCTCAAACCCGGACTCCAACTTCGCACCTCCCAGCACCTGGCGCTGACGCCGGCGCTGCAGCAGTCGATCAAGCTGCT
GCAGCTGTCGACCCTCGAACTCGAGCACGAGATCGAGCAGATCCTGCAAGAGAACCCGCTGCTCGAACGCGAGGACGATC
CCGTGGCGGCTACGCTGCGGGTCGACGCCGACGGCAGCATGCACACGACCGCGCCCGCCGCGCCGGAAGCCGACGGGGAA
CCCGGCGGCGAGACCGTGGAAGCCCCGACGCCGGCCGACGCCGGCGACGGACCGGACCTGCCCGACATGCCGGAGCTGCA
CCGCCCCGGCGGCGAACACGACGACGACACCGCGCCGCAACTGGCCGCGCCCGACGCGTCGCTGCGCGAGCACCTGCTGG
GCCAGCTCGCGCTCACGCAGGCCACGCCGCGCGATGCGGCGCTGGTGACGGCGCTGGTCGACGAGCTGGACGACAACGGC
TATCTGGACGTGTCGCTGGAAGAGCTCGCCGCGCTGTTCCCGCCCGAGCTGGAAATCGACGCCGACGAACTGCGCTCCGC
GCTGGGGCTGCTCCAGTCCTTCGACCCTGCCGGCGTGGGCGCCCGCAACATCTCCGAATGCCTCTGCCTGCAATTGCGCA
CGCCGGACCTCGACTGCCTGCCCGAGGCCCGCGATGCCGAGGTGCTGGCGCTGGCCCGCCAGATCGCGGCCCAGCACCTG
CCCCTGCTGGGTGCGCGTGACTACGCCAAGCTGCGCAAGGCGCTGGGCTGCAACGACGACCAGTTGCGCGCGGCCCAGAG
CCTGATCCGCCGGCTCGACCCCCGGCCCGGTTCGCGCTATTCGTCGCCCGCGGCGGACTACGTCGTGCCCGACGTGATCG
TGCGCAAGGTCGGCAACCAGTGGCGCGCGACGCTCAACGGCGAAGCCATGCCGCGGCTGCGCATCAACCAGATGTACGCG
CAGATCCTGAAATCGGAACGCAGCTCGGCCCATCCCGGGCTGTCCTCGCAGCTGCAGGAGGCGCGCTGGCTGATACGCAA
TGTCCAGCAACGCTTCGACACCATCCTGCGCGTGGCCCAGGCCATCGTCGACCGGCAGCAGGGTTTCCTCAACCATGGCG
AAGTCGCCATGCGGCCTCTTGTATTACGCGAAATAGCAGATACACTAGGCTTGCATGAGTCGACGATCTCACGCGTCACT
ACGCAGAAATACATGCTTACCCCCCTGGGGACTTTCGAGCTCAAGTATTTCTTCGGCAGCCACGTCGCCACGGAGACCGG
AGGAGCGGCATCGTCCACGGCGATCCGTGCGCTGATCAAGCAACTCATTGGTGCGGAGGATCCTACCCAGCCACTATCCG
ACAGCCAACTTGCGCAGACGCTGGGGGAGCAGGGTATCGTCGTGGCCCGCCGCACGGTGGCCAAATACCGCGAAGCGCTC
AAGATTCCGCCGGTTTCGCTGCGTAAGAGCATCTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-489)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(121-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.661

100

0.607