Detailed information NTG0894125

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: R4823_RS02000
• Genome accession: NZ_CP136998
• Coordinates: 397103..398308 (+)
• Length: 401 a.a.
• NCBI ID: WP_338617181.1
• Uniprot ID: -
• Organism: Pigmentiphaga sp. CHJ604
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 392103..403308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4823_RS01980	-	394542..395414 (+)	873	WP_087838436.1	MOSC N-terminal beta barrel domain-containing protein	-
R4823_RS01985	-	395428..395679 (-)	252	WP_087838435.1	YfhL family 4Fe-4S dicluster ferredoxin	-
R4823_RS01990	coaD	395708..396208 (-)	501	WP_087838434.1	pantetheine-phosphate adenylyltransferase	-
R4823_RS01995	rsmD	396386..396988 (-)	603	WP_132979797.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
R4823_RS02000	pilA	397103..398308 (+)	1206	WP_338617181.1	signal recognition particle-docking protein FtsY	Machinery gene
R4823_RS02005	-	398342..399250 (-)	909	WP_338617184.1	alpha/beta hydrolase	-
R4823_RS02010	-	399252..400220 (-)	969	WP_338617187.1	tripartite tricarboxylate transporter substrate binding protein	-
R4823_RS02015	-	400279..401076 (-)	798	WP_338617190.1	aspartate dehydrogenase	-
R4823_RS02020	gcvA	401181..402056 (+)	876	WP_338617192.1	transcriptional regulator GcvA	-
R4823_RS02025	-	402079..403029 (-)	951	WP_338617194.1	succinylglutamate desuccinylase/aspartoacylase family protein	-

Sequence

Protein

• Length: 401 a.a.
• Molecular weight: 42156.37 Da
• Isoelectric Point: 5.5563

>NTDB_id=894125 R4823_RS02000 WP_338617181.1 397103..398308(+) (pilA) [Pigmentiphaga sp. CHJ604]
MFSFFKKKTPQPSPEQDRAQEPPAAPVPAPAADQPAVPPAPREPIAQEPVAPGMAAPDTPVAPPPVPEEPAVPAQAPAPA
QPVPAPAPAPALQAAPPAKSSWLARLKSGLSRTGQSLTTLFVGVKVDEDLFEELETALIMADTGVDAAQSLLKGLRERVR
QERIEDGDRVRQVLRELLAEHLRPLERRFDLDRPAPIVTMIAGVNGAGKTTSIGKLARTFQQQGRRVLLAAGDTFRAAAR
EQLVEWGRRNDVTVIAQEGGDPAAVAFDAVKSGQARGMGVVMVDTAGRLPTQLHLMEEVKKIKRVIAKADASAPHEVLLV
IDGNTGQNALAQIKAFDQALGLTGLIVTKLDGTAKGGILAAVAAGAQGVRPVPVYWIGVGEGIDDLQPFVADEFAGALLG
N

Nucleotide

• Length: 1206 bp

>NTDB_id=894125 R4823_RS02000 WP_338617181.1 397103..398308(+) (pilA) [Pigmentiphaga sp. CHJ604]
ATGTTCAGTTTCTTCAAGAAGAAGACCCCCCAGCCTTCCCCCGAGCAGGATCGTGCGCAGGAGCCGCCCGCCGCGCCCGT
TCCCGCGCCGGCGGCGGACCAGCCCGCCGTCCCGCCGGCTCCCCGGGAGCCAATTGCCCAGGAGCCCGTCGCTCCCGGGA
TGGCGGCGCCCGACACGCCGGTAGCGCCGCCTCCCGTGCCGGAGGAGCCGGCGGTGCCCGCCCAGGCGCCCGCGCCGGCC
CAGCCCGTCCCCGCACCAGCTCCGGCGCCGGCGCTCCAGGCGGCCCCACCCGCCAAGTCGTCGTGGCTGGCGCGCCTCAA
GAGCGGGCTGTCGCGCACCGGCCAGAGCCTGACCACGCTGTTCGTGGGCGTGAAGGTCGACGAGGACCTGTTCGAGGAAC
TGGAGACCGCGCTCATCATGGCCGATACCGGCGTGGACGCGGCGCAATCGCTGCTCAAGGGGCTGCGCGAGCGGGTGCGC
CAGGAACGCATCGAGGATGGCGACCGCGTGCGCCAGGTACTGCGCGAACTGCTGGCCGAGCATCTGCGGCCGCTCGAGCG
CCGCTTCGACCTGGACCGCCCCGCGCCCATCGTGACCATGATCGCGGGCGTGAACGGGGCCGGCAAGACCACGTCCATCG
GCAAGCTGGCGCGCACCTTCCAGCAACAGGGCCGACGCGTGCTGCTGGCCGCGGGCGATACCTTCCGCGCGGCCGCGCGC
GAACAACTGGTGGAGTGGGGCCGCCGCAACGACGTCACGGTCATCGCCCAGGAAGGCGGCGATCCGGCCGCCGTCGCCTT
CGATGCGGTCAAGTCCGGCCAGGCGCGCGGCATGGGCGTGGTGATGGTCGATACCGCCGGCCGCCTGCCCACGCAGTTGC
ACCTGATGGAAGAGGTCAAGAAGATCAAGCGCGTGATCGCCAAGGCCGATGCCTCGGCGCCGCACGAGGTGCTGCTGGTG
ATAGACGGCAACACCGGACAGAACGCGCTGGCGCAGATCAAGGCCTTCGACCAGGCCCTGGGCCTGACGGGCCTGATCGT
GACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCGGTGGCGGCCGGCGCGCAGGGCGTACGGCCGGTGCCGG
TGTACTGGATAGGCGTGGGCGAGGGCATCGACGACCTGCAGCCCTTCGTGGCGGACGAGTTTGCCGGGGCGCTGCTGGGG
AATTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (197-399)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-176)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.714	100	0.531