Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   AAYT23_RS05080 Genome accession   NZ_CP154877
Coordinates   989509..992784 (+) Length   1091 a.a.
NCBI ID   WP_000772334.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234295     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 984509..997784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS05050 (AAYT23_05030) - 984568..985683 (+) 1116 WP_000706423.1 glycerate kinase -
  AAYT23_RS05055 (AAYT23_05035) - 985680..986126 (-) 447 WP_000131076.1 YueI family protein -
  AAYT23_RS05060 (AAYT23_05040) eno 986290..987594 (+) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  AAYT23_RS05065 (AAYT23_05045) - 987682..988128 (-) 447 WP_025169156.1 tyrosine-type recombinase/integrase -
  AAYT23_RS05070 (AAYT23_05050) - 988028..988983 (-) 956 Protein_999 IS630 transposase-related protein -
  AAYT23_RS05075 (AAYT23_05055) - 989154..989309 (+) 156 Protein_1000 diacylglycerol kinase family lipid kinase -
  AAYT23_RS05080 (AAYT23_05060) rexB 989509..992784 (+) 3276 WP_000772334.1 ATP-dependent nuclease subunit B Machinery gene
  AAYT23_RS05085 (AAYT23_05065) rexA 992781..996431 (+) 3651 WP_054366679.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  AAYT23_RS05090 (AAYT23_05070) - 996393..996560 (-) 168 WP_001828683.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124683.52 Da        Isoelectric Point: 5.6640

>NTDB_id=894087 AAYT23_RS05080 WP_000772334.1 989509..992784(+) (rexB) [Streptococcus pneumoniae strain 20234295]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHGKGAEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEGAVTK
QLQDLTTTLEAVEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESE
SKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQGLENP
AIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPN
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPCV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=894087 AAYT23_RS05080 WP_000772334.1 989509..992784(+) (rexB) [Streptococcus pneumoniae strain 20234295]
ATGAAATTACTTTATACTGATATTCGAACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGCTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAATTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGGCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTTAATCA
AATCGCCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
CTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCCGCTCAGGACTGTTCTCAAACTCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGATTAATCTTCTTAGAACTGACTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAACAATATATCCGCTATCTTGGTATTAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGCCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCCAGCCGAAAACAAAAGGCTGAAAACCTCCTACAAAAATGGAGTGTCTTTCTAAAAGAAGGAGCTGTGACCAAG
CAGTTACAAGATTTGACAACCACTTTGGAAGCTGTAGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGCCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGGTTAGTCTGGAAGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAATACCGTACCATTCCAGCAACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCATTGACT
GCTGACTTTGTCTATGCTATTGGACTAACTCAGGACAATTTACCAAAAATTTCTCAAAACACCAGTCTTCTGACAGATGA
AGAAAGGCAAAATCTAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGTTCTTGTCGGCTCCAAGCCTTTTTAACGAAAGTGAA
AGTAAGGAATCTGCCTATCTTCAAGAGTTGATCCATTTTGGATTTAGGCGGAGAGAGAAGAGGATGAATCACAAAGGACT
GTCTAAGGAGGATATGGGGTCCTATCACAGTCTTTTGTCTAGTCTGGTTGCCTATCACCAGCAGGGTGAGATGAGCGATA
CTGAGCAAGATTTGACTTTTGTCAAGGTTCTGTCGCGTGTCATAGGTAAAAAACTAGATCTGCAAGGTCTGGAAAATCCA
GCCATCCCAATCAGTCCAAGCAGCAAGACCTTAGCCAAGGACACCTTGCAAGCTCTCTATCCTGCCAAACAGGAGTTTTA
CCTGTCTACGTCGGGTTTGACAGAGTTTTATCGCAATGAATACAGTTATTTCCTACGCTACGTTTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCTGATGCCCGTAGTCACGGGAATTTCTTGCATCGTATCTTTGAACGCGCCTTGCAGTTGCCTAAT
GAAGATTCCTTTGACCAACGTCTAGAACAAGCTATTCAAGAAACCAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTTTGCTTGATGTTGCACGGACAACTGGACATATTCTCCGCCATAATCCAG
TCATCGAAACCATTAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGACCGTTTGAAAGCTGATGGAGCGATAGGAGTAGTAGACTACAAGTCGAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGACTCAATTCCCAACTGCCAACCTATCTAGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCTATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCCAGCAAGTCAATGAAATACCAAGGCCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTACAATAAAAACAAGGCCAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCGGCTGAGAAGATTTTAGAAGGCCAGTTCGCTATCAATCCCTATACCGAAAATGGCAGAAGCATTGCTCCATGCGTC
CAGCAACATCAAGCCATCACAGGCTTTGAAGCCAATTACCATTTGGGTCAAGCCCGTTTCCTAGAAAAGTTGGACTTAGC
TGATGGCAAGCGTCTGGTTGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

98.533

100

0.985