Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   R0Q54_RS18465 Genome accession   NZ_CP136992
Coordinates   3473016..3473480 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain J46     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3468016..3478480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS18445 (R0Q54_18445) - 3468851..3470203 (-) 1353 WP_069964227.1 IS1182 family transposase -
  R0Q54_RS18450 (R0Q54_18450) dapX 3470313..3471494 (-) 1182 WP_014479654.1 aminotransferase A -
  R0Q54_RS18455 (R0Q54_18455) - 3471696..3471857 (-) 162 WP_003245246.1 hypothetical protein -
  R0Q54_RS18460 (R0Q54_18460) cheV 3472061..3472972 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  R0Q54_RS18465 (R0Q54_18465) kre 3473016..3473480 (-) 465 WP_003232406.1 YkyB family protein Regulator
  R0Q54_RS18470 (R0Q54_18470) ykuC 3473606..3474898 (-) 1293 WP_014479656.1 MFS transporter -
  R0Q54_RS18475 (R0Q54_18475) ltdD 3474974..3475468 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  R0Q54_RS18480 (R0Q54_18480) ppeE 3475525..3476385 (-) 861 WP_003232400.1 metallophosphoesterase -
  R0Q54_RS18485 (R0Q54_18485) fadH 3476528..3477292 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=894079 R0Q54_RS18465 WP_003232406.1 3473016..3473480(-) (kre) [Bacillus subtilis strain J46]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=894079 R0Q54_RS18465 WP_003232406.1 3473016..3473480(-) (kre) [Bacillus subtilis strain J46]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1