Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AAYT23_RS02270 Genome accession   NZ_CP154877
Coordinates   442596..443645 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234295     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 437596..448645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS02240 (AAYT23_02225) - 438509..438865 (+) 357 WP_000114434.1 hypothetical protein -
  AAYT23_RS02245 (AAYT23_02230) dnaJ 439267..440403 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  AAYT23_RS02250 (AAYT23_02235) - 440737..440931 (-) 195 WP_001808905.1 hypothetical protein -
  AAYT23_RS02255 (AAYT23_02240) - 441093..441380 (-) 288 WP_000777760.1 hypothetical protein -
  AAYT23_RS02260 (AAYT23_02245) - 441390..441800 (-) 411 WP_001278301.1 HIT family protein -
  AAYT23_RS02265 (AAYT23_02250) pptA 441868..442599 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  AAYT23_RS02270 (AAYT23_02255) pptB 442596..443645 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  AAYT23_RS02275 (AAYT23_02260) - 443813..444142 (-) 330 WP_000132572.1 hypothetical protein -
  AAYT23_RS02280 (AAYT23_02265) - 444418..444756 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  AAYT23_RS02285 (AAYT23_02270) comE/blpR 444761..445498 (+) 738 WP_001219122.1 response regulator transcription factor Regulator
  AAYT23_RS02290 (AAYT23_02275) - 445512..446852 (+) 1341 WP_001017622.1 sensor histidine kinase -
  AAYT23_RS02295 (AAYT23_02280) blpC 446894..447049 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  AAYT23_RS02300 (AAYT23_02285) - 447106..448467 (-) 1362 WP_001069074.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=894063 AAYT23_RS02270 WP_000653771.1 442596..443645(+) (pptB) [Streptococcus pneumoniae strain 20234295]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=894063 AAYT23_RS02270 WP_000653771.1 442596..443645(+) (pptB) [Streptococcus pneumoniae strain 20234295]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47