Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   R0Q54_RS05200 Genome accession   NZ_CP136992
Coordinates   940215..940355 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain J46     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 935215..945355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS05175 (R0Q54_05175) yuxO 935492..935872 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  R0Q54_RS05180 (R0Q54_05180) comA 935891..936535 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  R0Q54_RS05185 (R0Q54_05185) comP 936616..938928 (-) 2313 WP_069964288.1 sensor histidine kinase Regulator
  R0Q54_RS05190 (R0Q54_05190) comX 938944..939165 (-) 222 WP_014480704.1 competence pheromone ComX -
  R0Q54_RS05195 (R0Q54_05195) - 939167..940030 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  R0Q54_RS05200 (R0Q54_05200) degQ 940215..940355 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  R0Q54_RS05205 (R0Q54_05205) - 940577..940702 (+) 126 WP_003228793.1 hypothetical protein -
  R0Q54_RS05210 (R0Q54_05210) - 940817..941185 (+) 369 WP_046381300.1 hypothetical protein -
  R0Q54_RS05215 (R0Q54_05215) pdeH 941161..942390 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  R0Q54_RS05220 (R0Q54_05220) pncB 942526..943998 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  R0Q54_RS05225 (R0Q54_05225) pncA 944014..944565 (-) 552 WP_014480709.1 cysteine hydrolase family protein -
  R0Q54_RS05230 (R0Q54_05230) yueI 944662..945060 (-) 399 WP_014480710.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=894035 R0Q54_RS05200 WP_003220708.1 940215..940355(-) (degQ) [Bacillus subtilis strain J46]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=894035 R0Q54_RS05200 WP_003220708.1 940215..940355(-) (degQ) [Bacillus subtilis strain J46]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1