Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   R0Q54_RS03260 Genome accession   NZ_CP136992
Coordinates   557294..558040 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552294..563040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS03235 (R0Q54_03235) mreC 552700..553572 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  R0Q54_RS03240 (R0Q54_03240) mreB 553603..554616 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  R0Q54_RS03245 (R0Q54_03245) radC 554708..555403 (-) 696 WP_014480455.1 RadC family protein -
  R0Q54_RS03250 (R0Q54_03250) maf 555440..556009 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  R0Q54_RS03255 (R0Q54_03255) spoIIB 556162..557160 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  R0Q54_RS03260 (R0Q54_03260) comC 557294..558040 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  R0Q54_RS03265 (R0Q54_03265) folC 558180..559472 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  R0Q54_RS03270 (R0Q54_03270) valS 559532..562174 (-) 2643 WP_069964239.1 valine--tRNA ligase -
  R0Q54_RS03275 (R0Q54_03275) - 562622..562813 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=894028 R0Q54_RS03260 WP_072592551.1 557294..558040(-) (comC) [Bacillus subtilis strain J46]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=894028 R0Q54_RS03260 WP_072592551.1 557294..558040(-) (comC) [Bacillus subtilis strain J46]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996