Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU34_RS02655 Genome accession   NZ_AP024911
Coordinates   550904..551422 (+) Length   172 a.a.
NCBI ID   WP_123015396.1    Uniprot ID   -
Organism   Vibrio zhugei strain KCTC 62784     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 545904..556422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU34_RS02645 gshA 548706..550268 (+) 1563 WP_123015395.1 glutamate--cysteine ligase -
  OCU34_RS02650 - 550296..550877 (+) 582 WP_261809154.1 hypothetical protein -
  OCU34_RS02655 luxS 550904..551422 (+) 519 WP_123015396.1 S-ribosylhomocysteine lyase Regulator
  OCU34_RS02660 - 551521..552801 (-) 1281 WP_123015397.1 HlyC/CorC family transporter -
  OCU34_RS02665 - 552887..553681 (-) 795 WP_123015398.1 inner membrane protein YpjD -
  OCU34_RS02670 ffh 553896..555272 (+) 1377 WP_123015399.1 signal recognition particle protein -
  OCU34_RS02675 rpsP 555491..555739 (+) 249 WP_123015400.1 30S ribosomal protein S16 -
  OCU34_RS02680 rimM 555764..556318 (+) 555 WP_123015401.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18961.63 Da        Isoelectric Point: 4.4836

>NTDB_id=89398 OCU34_RS02655 WP_123015396.1 550904..551422(+) (luxS) [Vibrio zhugei strain KCTC 62784]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDDITVFDLRFTVPNEALLSEKGIHTLEHLFAGFMRAHLNGDDVEIIDISP
MGCRTGFYMSLIGTPGEQQVADAWLAAMNDVLKVADQNQIPELNEYQCGTAKMHSLDEAKQIAQAVITSGIQVNKNDDLA
LPDAMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89398 OCU34_RS02655 WP_123015396.1 550904..551422(+) (luxS) [Vibrio zhugei strain KCTC 62784]
ATGCCGTTATTAGACAGCTTTACCGTCGATCACACGCGTATGCATGCCCCAGCCGTTCGTGTTGCTAAGAACATGCAAAC
GCCTAAAGGTGATGACATTACGGTGTTTGACTTACGTTTTACCGTACCCAATGAAGCGCTCCTTTCTGAAAAAGGGATTC
ATACACTAGAGCACCTATTTGCTGGCTTTATGCGTGCACACCTTAATGGTGATGATGTTGAAATCATTGATATTTCTCCA
ATGGGATGTCGTACTGGTTTTTACATGAGCTTGATTGGCACCCCAGGCGAACAGCAAGTGGCGGATGCATGGTTAGCGGC
AATGAACGATGTGTTGAAAGTGGCGGATCAAAACCAAATTCCTGAGTTGAATGAATATCAATGTGGTACGGCGAAGATGC
ACTCGCTTGATGAAGCGAAGCAAATTGCACAAGCCGTCATTACCAGTGGTATTCAAGTCAATAAAAATGATGATCTCGCA
CTGCCAGACGCAATGCTGCAAGAACTGAAAGTTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.287

99.419

0.808

Multiple sequence alignment