Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU60_RS21420 Genome accession   NZ_AP024908
Coordinates   833207..834382 (-) Length   391 a.a.
NCBI ID   WP_074371167.1    Uniprot ID   A0A1N6LZG4
Organism   Vibrio spartinae strain CECT 9026     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 820169..834382 833207..834382 within 0


Gene organization within MGE regions


Location: 820169..834382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS21350 - 820169..820801 (-) 633 WP_159439424.1 DUF1911 domain-containing protein -
  OCU60_RS23060 - 820863..821036 (-) 174 WP_370738656.1 PoNe immunity protein domain-containing protein -
  OCU60_RS21355 - 821152..821412 (-) 261 WP_074371155.1 hypothetical protein -
  OCU60_RS21360 - 821399..821659 (-) 261 WP_074371156.1 hypothetical protein -
  OCU60_RS21365 - 821856..822218 (-) 363 WP_074371157.1 hypothetical protein -
  OCU60_RS21370 - 822248..822751 (-) 504 Protein_709 contractile injection system protein, VgrG/Pvc8 family -
  OCU60_RS21375 - 823190..823384 (+) 195 WP_021020225.1 hypothetical protein -
  OCU60_RS21380 - 823513..824490 (-) 978 WP_074371159.1 PoNi-like cognate immunity protein -
  OCU60_RS21385 - 825107..825562 (-) 456 WP_139302078.1 hypothetical protein -
  OCU60_RS21390 - 825568..825894 (-) 327 WP_074371162.1 hypothetical protein -
  OCU60_RS21395 - 825888..826211 (-) 324 WP_083602540.1 lysozyme -
  OCU60_RS21400 - 826413..826796 (-) 384 WP_074371164.1 hypothetical protein -
  OCU60_RS21405 - 826793..827995 (-) 1203 WP_083602541.1 pesticin C-terminus-like muramidase -
  OCU60_RS21410 - 827985..829961 (-) 1977 WP_074371165.1 type VI secretion system Vgr family protein -
  OCU60_RS21415 - 831379..833160 (+) 1782 WP_235862114.1 hybrid sensor histidine kinase/response regulator -
  OCU60_RS21420 cqsA 833207..834382 (-) 1176 WP_074371167.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43941.31 Da        Isoelectric Point: 6.6827

>NTDB_id=89390 OCU60_RS21420 WP_074371167.1 833207..834382(-) (cqsA) [Vibrio spartinae strain CECT 9026]
MNNISKKLPDFIQSKINFHIHDLIEFNKNGKHLVLGKRPSSKDIVMQSNDYLCLANNSTIKHQMVDSIMRMDDSILMSAI
YLQDENSKPSIEQRLSEFTNFDSCLLSQSGWNANVGLLQAICSPDTNVYIDFFTHMSVWEGARYANAKVHPFMHNNMKHL
RKLIKRHGPGIIAVDSIYSTLGTITPLKELVEIAKEFGCATVIDESHSLGIYGKHGAGLIEELNLSREVDFMTASLAKSF
AYRAGAIWANNNVNQCIPFVSYPAIFSSALLPYDIDTLSAILDLISESDDRRHRLFYLSDKLRKGLIQLGIKIRSQSQII
SIETGDEGNTELVRDILENNGIFGAVFCRPATPKNSNLIRFSLNSSMTDSDIDKILSVCHLLVQNDEVFFK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=89390 OCU60_RS21420 WP_074371167.1 833207..834382(-) (cqsA) [Vibrio spartinae strain CECT 9026]
ATGAACAATATTAGTAAAAAATTACCAGATTTTATTCAGTCAAAGATCAATTTTCATATTCATGACTTAATTGAATTTAA
TAAAAACGGGAAACATCTTGTTTTAGGTAAGCGTCCCAGTAGTAAAGATATTGTAATGCAAAGTAATGATTATTTATGTT
TGGCAAATAATAGCACTATAAAGCATCAAATGGTCGACTCAATTATGAGAATGGATGATAGCATCTTAATGTCTGCCATT
TATCTGCAAGATGAAAATTCTAAGCCGTCTATAGAGCAGCGACTTTCAGAATTTACTAACTTTGATAGTTGCTTACTCTC
ACAATCTGGGTGGAACGCTAACGTTGGGTTATTACAAGCAATTTGCTCTCCGGATACGAATGTTTATATTGATTTTTTCA
CTCATATGTCAGTATGGGAGGGGGCTCGATATGCAAATGCGAAAGTACATCCGTTTATGCATAATAACATGAAGCATCTA
CGAAAATTAATTAAAAGACATGGCCCGGGAATCATTGCTGTCGATTCGATATACAGTACATTAGGTACGATCACACCATT
GAAAGAGCTTGTTGAGATTGCAAAAGAGTTTGGCTGTGCGACTGTGATTGATGAATCTCACTCTTTGGGTATCTATGGTA
AACATGGGGCTGGTTTGATTGAGGAGCTGAATTTATCAAGAGAAGTTGATTTTATGACTGCCAGCCTAGCTAAATCTTTT
GCGTACAGAGCCGGTGCTATATGGGCAAATAATAATGTTAATCAGTGTATACCTTTTGTGAGTTATCCTGCGATATTTAG
TTCTGCTCTATTGCCTTATGATATCGATACACTTAGTGCCATATTAGATTTAATCTCTGAATCAGATGATCGAAGACATC
GTCTCTTTTATCTCTCAGATAAACTCAGAAAAGGACTCATTCAACTCGGTATTAAAATTAGAAGTCAGTCTCAGATCATA
TCAATAGAAACTGGAGATGAGGGAAATACTGAGTTAGTCCGTGATATTTTAGAAAATAATGGAATATTTGGGGCTGTTTT
TTGCCGTCCAGCGACGCCTAAGAATAGCAACCTAATTCGGTTTTCCTTGAATAGTTCTATGACGGATAGTGATATTGATA
AAATATTATCCGTCTGTCATTTATTAGTTCAAAATGATGAGGTGTTTTTTAAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6LZG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

64.675

98.465

0.637

Multiple sequence alignment