Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU60_RS21020 Genome accession   NZ_AP024908
Coordinates   741129..742229 (-) Length   366 a.a.
NCBI ID   WP_370738654.1    Uniprot ID   -
Organism   Vibrio spartinae strain CECT 9026     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 736129..747229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS21005 - 736243..737718 (-) 1476 WP_074371096.1 cobyric acid synthase -
  OCU60_RS21010 - 737895..738422 (+) 528 WP_074371097.1 hypothetical protein -
  OCU60_RS21015 luxQ 738506..741088 (-) 2583 WP_074371098.1 LuxQ periplasmic sensor domain-containing protein Regulator
  OCU60_RS21020 luxP 741129..742229 (-) 1101 WP_370738654.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCU60_RS21025 - 742487..742786 (-) 300 WP_074371100.1 GIY-YIG nuclease family protein -
  OCU60_RS21030 - 742793..743443 (-) 651 WP_074371101.1 YceH family protein -
  OCU60_RS21035 - 743924..744241 (+) 318 WP_074371103.1 DUF496 family protein -
  OCU60_RS21040 - 744545..745018 (+) 474 WP_074371104.1 peroxiredoxin -
  OCU60_RS21045 - 745111..745524 (-) 414 WP_074371200.1 NUDIX hydrolase -
  OCU60_RS21050 cbiB 745570..746532 (-) 963 WP_074371105.1 adenosylcobinamide-phosphate synthase CbiB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42212.29 Da        Isoelectric Point: 6.9760

>NTDB_id=89389 OCU60_RS21020 WP_370738654.1 741129..742229(-) (luxP) [Vibrio spartinae strain CECT 9026]
MNEKMIMRLFGVILTTCFLVYHSAAYALSGYWHYNEFLDLNPKQKQLTLSLANAVRLEPKPLQATQKHPVKISVIYPGQQ
VSDYWSRNIRAFELRLNELDIKYEIHQVFTRPNLDIRQQSLSLMEALKNKSDYLIFTLDTTRHRKFIEHVLRGRETKMIL
QNVTTPVKDWAHQQPWMYIGFDHEIGTGMLVDYFKKKLKPHSPYSVLYFSQGYVSEARGDTFIQAMTEYPLVSSFYTQAN
QESAYKITLENMTEHPEIKLLYACSTDVALGAVKALKELGREDVLINGWGGGSAELEAIQHHDLDVTVMRMNDDTGVAMA
EAIKWDLEGKKVPTVYSGDFEVVSSADQPERVEALKQRAFRYSDRH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=89389 OCU60_RS21020 WP_370738654.1 741129..742229(-) (luxP) [Vibrio spartinae strain CECT 9026]
ATTAATGAGAAGATGATAATGAGACTTTTTGGCGTTATTTTAACCACCTGCTTCCTTGTTTATCATTCAGCAGCGTATGC
GTTAAGCGGCTATTGGCATTACAACGAATTTCTTGATTTAAACCCCAAGCAAAAGCAATTGACACTCTCTTTGGCAAATG
CGGTTCGGCTTGAGCCGAAGCCATTACAGGCGACTCAGAAACACCCAGTAAAAATATCGGTGATTTATCCCGGCCAGCAA
GTCTCGGATTATTGGAGCCGTAACATTCGGGCTTTTGAATTACGCTTGAATGAGCTGGATATCAAGTATGAAATTCATCA
AGTGTTTACGCGCCCGAATCTGGATATTCGTCAACAAAGTCTGTCTTTGATGGAAGCATTAAAGAATAAATCCGACTATT
TGATTTTTACGCTCGATACCACCAGACACAGAAAATTTATTGAGCATGTGTTAAGAGGCCGAGAAACCAAAATGATTTTA
CAGAATGTGACGACACCCGTGAAAGACTGGGCTCACCAACAACCTTGGATGTATATCGGTTTTGACCATGAAATTGGAAC
TGGCATGTTGGTGGATTATTTTAAGAAAAAATTGAAACCCCATTCACCTTATTCTGTACTGTATTTTTCACAAGGCTATG
TGAGCGAAGCCCGAGGTGATACCTTCATTCAAGCGATGACTGAATACCCGCTCGTCTCATCATTTTATACTCAGGCCAAT
CAGGAAAGTGCCTATAAAATTACACTTGAGAATATGACAGAGCATCCGGAGATTAAATTGTTGTATGCCTGTTCAACCGA
TGTTGCTCTCGGTGCAGTGAAAGCCTTGAAAGAACTCGGCAGAGAGGATGTTCTCATCAATGGCTGGGGTGGCGGTTCTG
CCGAGCTGGAGGCGATACAGCATCATGATTTGGATGTCACGGTGATGCGAATGAATGATGACACCGGTGTTGCAATGGCA
GAAGCCATCAAGTGGGATCTTGAAGGGAAAAAGGTACCGACGGTTTATTCCGGGGACTTTGAGGTAGTTTCCAGTGCAGA
TCAACCCGAGCGAGTTGAAGCGTTGAAACAACGAGCATTCCGGTATTCTGATCGACACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(72-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.859

100

0.642

Multiple sequence alignment