Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAG092_RS08635 Genome accession   NZ_CP154874
Coordinates   1773867..1774601 (+) Length   244 a.a.
NCBI ID   WP_373389360.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1768867..1779601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS08610 (AAG092_08555) bioD 1769243..1769920 (-) 678 WP_373389354.1 dethiobiotin synthase -
  AAG092_RS08615 (AAG092_08560) bioC 1769949..1770752 (-) 804 WP_373389355.1 malonyl-ACP O-methyltransferase BioC -
  AAG092_RS08620 (AAG092_08565) - 1770745..1771476 (-) 732 WP_373389356.1 alpha/beta fold hydrolase -
  AAG092_RS08625 (AAG092_08570) bioF 1771469..1772638 (-) 1170 WP_373389357.1 8-amino-7-oxononanoate synthase -
  AAG092_RS08630 (AAG092_08575) bioB 1772756..1773808 (-) 1053 WP_373389358.1 biotin synthase BioB -
  AAG092_RS08635 (AAG092_08580) comF 1773867..1774601 (+) 735 WP_373389360.1 ComF family protein Machinery gene
  AAG092_RS08640 (AAG092_08585) modA 1774663..1775400 (+) 738 WP_373389361.1 molybdate ABC transporter substrate-binding protein -
  AAG092_RS08645 (AAG092_08590) modB 1775363..1776076 (+) 714 WP_373389362.1 molybdate ABC transporter permease subunit -
  AAG092_RS08650 (AAG092_08595) - 1776174..1777148 (+) 975 WP_373389363.1 serine/threonine protein kinase -
  AAG092_RS08655 (AAG092_08600) - 1777249..1778145 (+) 897 WP_373389364.1 LysR family transcriptional regulator -
  AAG092_RS08660 (AAG092_08605) - 1778149..1779051 (+) 903 WP_373389366.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27090.45 Da        Isoelectric Point: 8.8410

>NTDB_id=893871 AAG092_RS08635 WP_373389360.1 1773867..1774601(+) (comF) [Pseudomonas alcaligenes strain Med1]
MRCQPFADDQVYIWTKNEQSCLLCDEPADTGQPLCSACEGELPWLGGHCRICALPLPGQGLTCGACLRRPPAFSRVEAAW
RYAFPLDSLITRFKHQAQWPMGRLLAALLSHHLQHAFAEGLPRPDLLLPVPLGRKRLRRRGFNQAEMLATWLAAALDLPL
QRHWLLRPQEGAHQQELDAAARKRNLRRAFALHAQATPAGRHVALVDDVLTTGATAEALARLLLRAGAVRVDIYCLARTP
KPGD

Nucleotide


Download         Length: 735 bp        

>NTDB_id=893871 AAG092_RS08635 WP_373389360.1 1773867..1774601(+) (comF) [Pseudomonas alcaligenes strain Med1]
ATGCGCTGTCAACCATTCGCGGACGACCAGGTTTACATCTGGACAAAAAACGAACAATCCTGCCTGCTGTGCGATGAACC
GGCGGATACCGGACAGCCGCTGTGCAGTGCCTGCGAGGGCGAGCTGCCCTGGCTCGGCGGACACTGCCGGATCTGCGCCC
TGCCCCTGCCGGGCCAGGGGCTGACCTGCGGCGCCTGCCTCAGGCGACCACCGGCGTTCAGCCGGGTCGAAGCCGCGTGG
CGCTATGCCTTCCCGCTCGACAGCCTGATCACCCGCTTCAAGCACCAGGCACAGTGGCCCATGGGACGTCTGCTGGCCGC
CTTGCTGTCACATCACCTGCAGCACGCCTTCGCCGAGGGCCTGCCGCGCCCCGACCTGCTGCTGCCGGTGCCGCTCGGGC
GCAAGCGCCTGCGCCGCCGCGGCTTCAACCAGGCCGAGATGCTCGCCACCTGGCTGGCGGCGGCGCTGGACCTGCCGCTG
CAGCGCCACTGGTTGCTGCGCCCGCAGGAGGGGGCACACCAGCAGGAACTGGACGCCGCCGCGCGCAAGCGCAACCTGCG
CCGGGCCTTCGCCCTGCATGCGCAGGCCACGCCGGCGGGCCGGCATGTCGCGCTGGTCGACGACGTGCTGACCACCGGCG
CCACCGCCGAGGCGCTGGCGCGCCTGCTGCTGCGGGCCGGGGCGGTGCGGGTGGACATCTACTGCCTGGCGCGCACGCCC
AAGCCGGGCGACTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(169-240)

Double zinc ribbon domain (DZR_2)

(20-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

39.738

93.852

0.373
  comFC Legionella pneumophila str. Paris

40.183

89.754

0.361