Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   AAG092_RS07405 Genome accession   NZ_CP154874
Coordinates   1527057..1527770 (-) Length   237 a.a.
NCBI ID   WP_373389567.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522057..1532770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS07385 (AAG092_07340) - 1523375..1524376 (+) 1002 WP_373389166.1 response regulator -
  AAG092_RS07390 (AAG092_07345) - 1524380..1524826 (+) 447 WP_373389167.1 PAS domain-containing protein -
  AAG092_RS07395 (AAG092_07350) - 1524832..1526163 (-) 1332 WP_373389168.1 DEAD/DEAH box helicase -
  AAG092_RS07400 (AAG092_07355) - 1526226..1527008 (+) 783 WP_373389169.1 TatD family hydrolase -
  AAG092_RS07405 pilJ 1527057..1527770 (-) 714 WP_373389567.1 methyl-accepting chemotaxis protein Machinery gene
  AAG092_RS07410 - 1527912..1529273 (-) 1362 Protein_1463 HAMP domain-containing protein -
  AAG092_RS07415 (AAG092_07365) - 1529264..1530154 (+) 891 WP_373389170.1 ROK family protein -
  AAG092_RS07420 (AAG092_07370) ampE 1530165..1530986 (-) 822 WP_373389171.1 regulatory signaling modulator protein AmpE -
  AAG092_RS07425 (AAG092_07375) ampD 1530987..1531541 (-) 555 WP_373389172.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 24774.59 Da        Isoelectric Point: 4.3108

>NTDB_id=893860 AAG092_RS07405 WP_373389567.1 1527057..1527770(-) (pilJ) [Pseudomonas alcaligenes strain Med1]
MNQMSATAQEVARSAAAAVGSAQSVNDETVSGRAMVEAQVGSIQRLASEIEQSVNVINQLAADSASISQVLDVIKGIAGQ
TNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKRTHQSTEEIEQMIGRLQGGVGATVTAMNGSHQMVESTVSQSAQVQQ
ALENILGAVGMIVDQNQQIAAAAEQQTAVAHDIDMNIVEINQAGERTAEGAVQTEQASRELSDQVARLKELISAFRV

Nucleotide


Download         Length: 714 bp        

>NTDB_id=893860 AAG092_RS07405 WP_373389567.1 1527057..1527770(-) (pilJ) [Pseudomonas alcaligenes strain Med1]
ATGAACCAGATGTCCGCCACCGCCCAGGAAGTGGCGCGCAGCGCCGCCGCCGCGGTGGGCAGCGCACAGAGCGTCAACGA
CGAGACGGTCAGCGGCCGTGCCATGGTCGAGGCGCAGGTCGGCAGCATCCAGCGCCTGGCCAGCGAGATCGAGCAGTCGG
TGAACGTGATCAACCAGCTGGCCGCCGACAGCGCCTCGATCAGCCAGGTGCTGGACGTGATCAAGGGCATCGCCGGGCAG
ACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCGGCGCGCGCCGGCGAACAGGGGCGTGGCTTCGCCGTGGTGGCCGA
CGAGGTGCGCAACCTGGCCAAGCGTACTCACCAGTCCACCGAGGAGATCGAGCAGATGATCGGTCGCCTGCAGGGCGGTG
TGGGCGCCACCGTGACCGCCATGAACGGCAGCCACCAGATGGTCGAGAGCACCGTCAGCCAGTCGGCGCAGGTGCAGCAG
GCGCTGGAAAACATCCTCGGCGCGGTCGGCATGATCGTCGACCAGAACCAGCAGATCGCCGCCGCCGCCGAGCAGCAGAC
CGCCGTGGCCCACGACATCGACATGAACATCGTCGAGATCAACCAGGCCGGCGAGCGTACCGCCGAAGGCGCGGTACAGA
CCGAACAGGCCAGCCGCGAGCTGTCCGATCAGGTGGCGCGGCTCAAGGAGCTGATCAGCGCCTTCCGCGTCTGA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(47-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

36.752

98.734

0.363