Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   AAG092_RS05735 Genome accession   NZ_CP154874
Coordinates   1192626..1193342 (+) Length   238 a.a.
NCBI ID   WP_373389562.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1187626..1198342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS05705 (AAG092_05670) - 1187856..1188455 (+) 600 WP_373388906.1 DUF4136 domain-containing protein -
  AAG092_RS05710 (AAG092_05675) - 1188519..1189079 (+) 561 WP_373388907.1 DUF4136 domain-containing protein -
  AAG092_RS05715 (AAG092_05680) - 1189076..1189564 (+) 489 WP_373388908.1 N-acetyltransferase family protein -
  AAG092_RS05720 (AAG092_05685) - 1189621..1190064 (+) 444 WP_110681091.1 DMT family transporter -
  AAG092_RS05725 (AAG092_05690) - 1190212..1191273 (+) 1062 WP_373389561.1 GGDEF domain-containing protein -
  AAG092_RS05730 - 1191450..1192481 (+) 1032 Protein_1131 methyl-accepting chemotaxis protein -
  AAG092_RS05735 pilJ 1192626..1193342 (+) 717 WP_373389562.1 methyl-accepting chemotaxis protein Machinery gene
  AAG092_RS05740 (AAG092_05700) pbpC 1193350..1195671 (-) 2322 WP_373388909.1 peptidoglycan glycosyltransferase PbpC -
  AAG092_RS05745 (AAG092_05705) - 1195752..1196042 (+) 291 WP_373388910.1 hypothetical protein -
  AAG092_RS05750 (AAG092_05710) - 1196116..1196511 (-) 396 WP_373388911.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 24791.25 Da        Isoelectric Point: 4.2027

>NTDB_id=893857 AAG092_RS05735 WP_373389562.1 1192626..1193342(+) (pilJ) [Pseudomonas alcaligenes strain Med1]
MNEMTATVQDVARNAEAAAGSAEQADYQAAQGSHTVQQAIARIENLAQSIEQSAGSIERLKQDSNNIGTVLDVIKSIAEQ
TNLLALNAAIEAARAGEAGRGFAVVADEVRALARRTQESTAEIEGLISTLQSGAEGAVQTMGQSREQAGDTVTAARQAGE
ALQAINLAVSNIQQMNQQIATAAEQQSSVAEEINRSVSSIRDVAEQSAAATEETSAASVDLARLGGELQTLVNRFKLA

Nucleotide


Download         Length: 717 bp        

>NTDB_id=893857 AAG092_RS05735 WP_373389562.1 1192626..1193342(+) (pilJ) [Pseudomonas alcaligenes strain Med1]
ATGAACGAGATGACCGCCACCGTGCAGGATGTCGCGCGCAACGCCGAGGCCGCCGCCGGTTCCGCCGAGCAGGCCGACTA
CCAGGCGGCCCAGGGCAGCCACACCGTGCAGCAGGCCATCGCCCGCATCGAGAACCTGGCGCAGAGCATCGAGCAGTCGG
CCGGCTCCATCGAGCGCCTGAAGCAGGACAGCAACAACATCGGCACCGTGCTCGACGTGATCAAGAGCATTGCCGAGCAG
ACCAACCTGCTGGCGCTCAATGCGGCCATCGAGGCGGCCCGCGCCGGCGAGGCCGGACGCGGCTTCGCCGTGGTGGCCGA
CGAGGTACGCGCGCTGGCACGTCGCACCCAGGAATCGACCGCGGAGATCGAGGGCCTGATCAGCACCCTGCAGAGCGGTG
CCGAAGGCGCGGTGCAGACCATGGGCCAGAGCCGCGAGCAGGCCGGCGACACCGTGACCGCCGCCCGCCAGGCCGGCGAG
GCGCTGCAGGCGATCAACCTGGCGGTGTCGAATATCCAGCAGATGAACCAGCAGATCGCCACCGCCGCAGAACAGCAGAG
CTCGGTGGCCGAGGAGATCAACCGCAGCGTGTCCAGCATCCGCGATGTGGCCGAGCAGTCGGCCGCGGCCACCGAGGAAA
CCTCGGCCGCCAGCGTCGACCTGGCGCGCCTGGGTGGCGAGCTGCAGACCCTGGTCAACCGTTTCAAGCTAGCCTGA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(21-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

37.768

97.899

0.37