Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   AAG092_RS03510 Genome accession   NZ_CP154874
Coordinates   735500..735856 (-) Length   118 a.a.
NCBI ID   WP_110682561.1    Uniprot ID   A0A6M8FFH3
Organism   Pseudomonas alcaligenes strain Med1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730500..740856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS03485 (AAG092_03465) - 730585..731478 (-) 894 WP_373388565.1 radical SAM protein -
  AAG092_RS03490 (AAG092_03470) - 731508..732476 (-) 969 WP_373388566.1 GTP 3',8-cyclase MoaA -
  AAG092_RS03495 (AAG092_03475) - 732558..733196 (-) 639 WP_110682558.1 TetR/AcrR family transcriptional regulator -
  AAG092_RS03500 (AAG092_03480) - 733273..734406 (+) 1134 WP_373388567.1 aminotransferase class V-fold PLP-dependent enzyme -
  AAG092_RS03505 (AAG092_03485) - 734644..735426 (-) 783 WP_373388568.1 TatD family hydrolase -
  AAG092_RS03510 (AAG092_03490) pilZ 735500..735856 (-) 357 WP_110682561.1 PilZ domain-containing protein Machinery gene
  AAG092_RS03515 (AAG092_03495) - 735893..736879 (-) 987 WP_373388569.1 DNA polymerase III subunit delta' -
  AAG092_RS03520 (AAG092_03500) tmk 736872..737504 (-) 633 WP_373388570.1 dTMP kinase -
  AAG092_RS03525 (AAG092_03505) mltG 737514..738551 (-) 1038 WP_373388571.1 endolytic transglycosylase MltG -
  AAG092_RS03530 (AAG092_03510) pabC 738555..739370 (-) 816 WP_373388572.1 aminodeoxychorismate lyase -
  AAG092_RS03535 (AAG092_03515) fabF 739370..740614 (-) 1245 WP_373388573.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12777.86 Da        Isoelectric Point: 9.9700

>NTDB_id=893850 AAG092_RS03510 WP_110682561.1 735500..735856(-) (pilZ) [Pseudomonas alcaligenes strain Med1]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTAKSYKLGDEVFMLLNLMDEPEKIPVAGKVVWITPKGAQG
NRAAGVGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=893850 AAG092_RS03510 WP_110682561.1 735500..735856(-) (pilZ) [Pseudomonas alcaligenes strain Med1]
ATGAGTTTGCCACCGAATCTGGGACCGCGTAACGGCATCCTGTCCCTCACCATCAAGGACAAGTCGGTGCTGTATGCCGC
CTACATGCCGTTCATCAAGAACGGCGGGCTGTTCATCCCCACCGCCAAGAGCTACAAGCTGGGCGACGAAGTGTTCATGC
TGCTCAACCTGATGGACGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTGGTATGGATCACCCCCAAGGGCGCCCAGGGC
AACCGCGCCGCCGGTGTCGGCGTGCAGTTCAACGACGGCGACAACACCGCGCGCAACAAGATCGAGACTTACCTGGCCGG
TGCGCTGAAATCGGATCGCCCGACCCACACCATGTGA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8FFH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

50.926

91.525

0.466
  pilZ Legionella pneumophila strain ERS1305867

50.926

91.525

0.466