Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CYJ98_RS09115 Genome accession   NZ_CP136962
Coordinates   1956683..1958215 (-) Length   510 a.a.
NCBI ID   WP_167382863.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951683..1963215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS09095 (CYJ98_009095) - 1952398..1953318 (+) 921 WP_101755673.1 patatin-like phospholipase family protein -
  CYJ98_RS09100 (CYJ98_009100) - 1953427..1955283 (+) 1857 WP_101755672.1 ribonuclease catalytic domain-containing protein -
  CYJ98_RS09105 (CYJ98_009105) - 1955419..1955646 (+) 228 WP_003681131.1 exodeoxyribonuclease VII small subunit -
  CYJ98_RS09110 (CYJ98_009110) - 1955630..1956526 (+) 897 WP_101755671.1 polyprenyl synthetase family protein -
  CYJ98_RS09115 (CYJ98_009115) pilA 1956683..1958215 (-) 1533 WP_167382863.1 signal recognition particle-docking protein FtsY Machinery gene
  CYJ98_RS09120 (CYJ98_009120) msrAB 1958361..1959929 (+) 1569 WP_101755670.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  CYJ98_RS09125 (CYJ98_009125) purB 1960061..1961431 (-) 1371 WP_101755669.1 adenylosuccinate lyase -
  CYJ98_RS09130 (CYJ98_009130) - 1961642..1962082 (+) 441 WP_101755668.1 surface-adhesin E family protein -
  CYJ98_RS09135 (CYJ98_009135) - 1962466..1963035 (-) 570 WP_101755793.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54682.65 Da        Isoelectric Point: 4.1889

>NTDB_id=893800 CYJ98_RS09115 WP_167382863.1 1956683..1958215(-) (pilA) [Neisseria perflava strain UMB0023]
MFSFFRRKKKQETPAPEEAQVQETAAKVESEVAQVVENIKEDAESLAESVKGHIESVVESAVETVSETVEQVREALTETP
SETIEKVEEHVEVAKEAAVETVSEAVDQVQEAVAEMPSEVAEVAEEAAEQAEAAKEAAVETVSEAVEQVQETVAEMPSEV
AEVAEEAAEQAETVKEEAVEAVSEAVEQVQEAIAETPAEAPAQAEEPKLSWAARLKQGLTKSRDKMAKSLAGVFGGGQID
EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPETKEPFVIMLAGING
AGKTTSIGKLAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTA
GRLPTQLHLMEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALASDR
PVPVRYIGVGEGIDDLRPFNAKAFVDALLD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=893800 CYJ98_RS09115 WP_167382863.1 1956683..1958215(-) (pilA) [Neisseria perflava strain UMB0023]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACTCCGGCTCCTGAGGAGGCTCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAGTAGTTGAAAATATTAAAGAAGATGCCGAATCTTTAGCAGAAAGCGTCAAAGGGCATA
TTGAATCAGTTGTCGAATCGGCTGTTGAAACTGTCAGCGAAACCGTCGAGCAGGTTCGGGAAGCTTTGACCGAAACGCCG
TCTGAAACAATCGAAAAAGTAGAAGAACACGTTGAAGTGGCAAAAGAAGCGGCCGTTGAAACCGTCAGCGAGGCTGTTGA
TCAGGTTCAAGAAGCCGTTGCCGAGATGCCGTCTGAAGTGGCCGAGGTTGCTGAGGAAGCAGCAGAACAGGCTGAGGCGG
CAAAAGAAGCAGCAGTTGAAACCGTCAGCGAGGCTGTTGAGCAGGTTCAAGAAACCGTTGCCGAGATGCCGTCTGAAGTG
GCCGAGGTTGCTGAGGAAGCAGCAGAACAGGCCGAAACGGTCAAAGAAGAAGCTGTTGAAGCAGTTAGCGAAGCTGTCGA
GCAAGTTCAAGAAGCCATTGCGGAAACACCGGCTGAAGCCCCTGCTCAGGCAGAAGAACCCAAGCTCAGTTGGGCTGCGC
GTTTGAAACAAGGCTTGACCAAATCACGTGACAAAATGGCAAAATCGTTGGCCGGCGTGTTTGGCGGCGGGCAAATCGAC
GAGGATTTGTACGAAGAGCTGGAAACTGTTCTGATTACCAGCGATATGGGCATGGAAGCCACCGAATACTTGATGAAAGA
CGTGCGCGACCGTGTCAGCCTCAAAGGCCTCAAAGATGGCAACGAATTGCGCGGCGCGCTGAAGGATGCGCTGTACGACT
TGATTAAGCCTCTGGAGAAGCCTTTGGTCTTGCCGGAAACCAAGGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGT
GCAGGCAAAACCACGTCTATCGGCAAACTGGCCAAATATTTCCAAGCGCAGGGCAAATCTGTGTTGCTGGCGGCAGGCGA
TACTTTCCGTGCCGCCGCGCGTGAGCAGCTTCAGGCTTGGGGCGAGCGCAACAATGTAACCGTGATTTCGCAAACCACAG
GCGATTCCGCAGCCGTTTGCTTCGATGCTGTCCAAGCCGCCAAAGCGCGTGGGATCGATATCGTGCTGGCTGATACAGCC
GGACGCCTGCCGACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAAGCCATGCCTGATGC
GCCACATGAAATCATCGTCGTGCTTGATGCCAACATTGGTCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGAAGCTC
TGGGTCTGACCGGCCTTATCGTCACCAAACTCGACGGTACAGCCAAAGGCGGTATCCTTGCCGCCCTTGCCTCTGACCGC
CCAGTTCCTGTCCGCTATATCGGCGTAGGCGAAGGCATCGATGATTTGCGTCCGTTTAATGCCAAAGCGTTCGTGGATGC
CCTATTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(310-509)

SRP54-type protein, helical bundle domain (SRP54_N)

(225-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

84.39

80.392

0.678