Detailed information NTG0089380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU60_RS14350
• Genome accession: NZ_AP024907
• Coordinates: 3207202..3208188 (-)
• Length: 328 a.a.
• NCBI ID: WP_074371875.1
• Uniprot ID: A0A1N6M1I8
• Organism: Vibrio spartinae strain CECT 9026
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3202202..3213188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU60_RS14335	-	3202212..3204269 (+)	2058	WP_074371871.1	ATP-binding protein	-
OCU60_RS14340	hpxO	3204313..3205467 (-)	1155	WP_074371872.1	FAD-dependent urate hydroxylase HpxO	-
OCU60_RS14345	-	3206057..3207106 (+)	1050	WP_074371874.1	pectate lyase	-
OCU60_RS14350	rpoS	3207202..3208188 (-)	987	WP_074371875.1	RNA polymerase sigma factor RpoS	Regulator
OCU60_RS14355	-	3208270..3209178 (-)	909	WP_074371876.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU60_RS14360	-	3209181..3209807 (-)	627	WP_074371877.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU60_RS14365	surE	3209813..3210553 (-)	741	WP_074371878.1	5'/3'-nucleotidase SurE	-
OCU60_RS14370	truD	3210557..3211603 (-)	1047	WP_074371879.1	tRNA pseudouridine(13) synthase TruD	-
OCU60_RS14375	ispF	3211684..3212157 (-)	474	WP_074371880.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU60_RS14380	ispD	3212203..3212895 (-)	693	WP_074371881.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU60_RS14385	ftsB	3212896..3213177 (-)	282	WP_074371882.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37636.48 Da
• Isoelectric Point: 4.6440

>NTDB_id=89380 OCU60_RS14350 WP_074371875.1 3207202..3208188(-) (rpoS) [Vibrio spartinae strain CECT 9026]
MSKSNSVTKVGQFDFDSGAFDLNTLDNEVSSDATPVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIAFELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=89380 OCU60_RS14350 WP_074371875.1 3207202..3208188(-) (rpoS) [Vibrio spartinae strain CECT 9026]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGGTCAATTTGATTTTGATTCAGGAGCGTTTGATCTCAATACATTGGACAA
TGAGGTCAGTTCTGACGCTACACCCGTCGAAACTCGAGAAGATTACGAAGTAACTTCCAAGAGCTTAGACGCAACTCAAC
TCTATTTAGGCGAAATTGGTTTTTCTCCTTTGTTAACCGCAGAGGAAGAAATCCTGTATGCACGTCGGGCTCTCCGGGGT
GATGAGGCCGCTCGTAAACGAATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGTAATCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGCTTTTCTACGTATGCAACCTGGTGGATCCGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATACACGTTGTCAAAGAACTGAATATTTATTTACGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGTTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGTCTGAATGAACGTATTA
GTTCTGTTGATACACCGATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCAAAACACTATGACCCA
GAATATTCGACAGAAGATGATGATATCAAATCTTCACTCTTACATTGGTTAGATGAACTAAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGCTTGCTCGGCTATGAACCATCCACTTTAGAAGAAGTTGGTAAAGAGATTAATCTAACCCGTG
AGCGAGTTCGTCAAATCCAAGTCGAAGGCCTGCGTCGTTTGAGAGAAATTCTACTGAAACAAGGCTTGAATATGGAGTCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1N6M1I8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.835